Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1577
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 27 2.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.8
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 3.8
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 26 5.0
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 26 5.0
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 26 6.6
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 6.6
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 26 6.6
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 8.8
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.8
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 552 HTPSTKLTAPSEPLSTPLMHTTASTAVVHNTGPTGGPTHIKAV---PGPP 692
HTPS L+ LST ++H + A+ ++ P P HI PG P
Sbjct: 3 HTPSFDLSDIKSTLSTNVLHADDAYALENDVAP---PIHISTTYTYPGTP 49
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 555 TPSTKLTAPSEPLSTPLMHTTASTAVVHNTGPTGGPTHIKAVPGPPILPSLNIS 716
T ST + + S+PL T+ S + PTGG + + + P P +P + S
Sbjct: 92 TSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSL-STPITPTVPPTSTS 144
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +3
Query: 561 STKLTAPSEPLSTPLMHTTASTAVVHNTGPTGGPTHIKAV----PGPPILPSLN 710
+T +PS P TPL+ T + N+ P HI V P + PSL+
Sbjct: 256 ATHSPSPSLPFKTPLLPVTKTPLEEANSSPAAQNQHITTVDHVHPQVSMTPSLS 309
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +2
Query: 320 KLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAK----IVAHQAEEIAYPKYEYNYS 481
K A ++ T P P ++AP+A HS P +++A ++ +P E ++S
Sbjct: 119 KRATSSQETKRDRPLPNIRNSAPSATRSHSTPCVAPGYLRTSNEAADVVFPHEEAHFS 176
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 287 PQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAH 436
PQT ++P+ +A +TPV+ + P P T P ++ AP+ AH
Sbjct: 222 PQTTQDSSPILTMAPSTPVSVGSTP-PSTPSVLP--IAKQLAPMNVCKAH 268
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = +2
Query: 494 HSGDNKSQQEVRDGDAVKGSYSFHEADGSIRTVEYTADAHNGF 622
H N ++Q V + + DG + T D HNGF
Sbjct: 17 HVSQNIAKQVVNNENVFMKLVMTRMLDGKTEVIPLTTDVHNGF 59
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 185 GQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPVPPGDQLG 51
GQ ++ P+R N+H+GF + V + + +S+ G QLG
Sbjct: 781 GQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA----GKQLG 821
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 131 RHGVRCSGRKLPQQMSSGPVPPGD 60
R+ + CSGRKL +Q +G GD
Sbjct: 59 RNEITCSGRKLYRQKGTGHARVGD 82
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 555 TPSTKLTAPSEPLSTPLMHTTASTAVVHNTGPTGGPTHIKAVP 683
TPST S + + + ST H PTG +HI A P
Sbjct: 26 TPSTSQLKHSHESNVKM---STSTVTEHRKKPTGSGSHITASP 65
>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +2
Query: 464 YEYNYSV---ADGHSGDNKSQQEVRDGDAVKGSYS 559
+++N+S +DGHS D QQ + D+V +S
Sbjct: 104 FDFNFSCYFGSDGHSNDTLCQQYIDVADSVGEQFS 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,546
Number of Sequences: 5004
Number of extensions: 43972
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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