Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1575
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...   223   1e-59
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    45   9e-06
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    29   0.87 
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    28   1.1  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    27   2.6  
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.6  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    26   6.1  

>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score =  223 bits (546), Expect = 1e-59
 Identities = 105/218 (48%), Positives = 145/218 (66%)
 Frame = +1

Query: 49  MCGIFAYINHLTPKTRREILELLVNGLKRLEYRGYDSAGVAVDSADQKDIAVVKRSGKVA 228
           MCGIF YIN+L  + R  IL+ LV GLKRLEYRGYDS+G AVD  + +D  + K  G V+
Sbjct: 1   MCGIFGYINYLVERDRGYILKTLVKGLKRLEYRGYDSSGCAVDGDEGEDFIMFKEVGNVS 60

Query: 229 ALEELLQERSIELSVEECVDSHCGIAHTRWATHGEPSAVNSHPQRSGEDNAFVVIHNGII 408
            LE  ++  ++  S +    +HC I+HTRWATHG PS +N HPQRS   + F+V+HNGI+
Sbjct: 61  KLEASIKGSNVNKSTKFI--NHCAISHTRWATHGIPSPINCHPQRSDPHSEFIVVHNGIL 118

Query: 409 TNYKEVKTFLENKGYIFESQTDTEAIAKLIHHIYNQHKESSFXXXXXXXXXXXXGAFALC 588
           TNY+E++T LE++G +FES+TDTE +AKL   IY+      F            GA+AL 
Sbjct: 119 TNYRELRTVLESRGMVFESETDTECVAKLAKFIYDTTPGVDFTSLAKLVFRELEGAYALL 178

Query: 589 FKSRYFPNECVATRRGSPLLVGIKTPRRLSSNHVPIMY 702
            KS ++P E VATRRGSPL+VG+K+ ++L  + V + +
Sbjct: 179 IKSSHYPGEVVATRRGSPLIVGVKSEQKLKVDFVDVEF 216


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 37/135 (27%), Positives = 62/135 (45%)
 Frame = +1

Query: 49  MCGIFAYINHLTPKTRREILELLVNGLKRLEYRGYDSAGVAVDSADQKDIAVVKRSGKVA 228
           MCGI A    +     ++    +  GL  L++RG D+AG+ V + ++  +   K SG VA
Sbjct: 1   MCGILAL---MLADPHQQACPEIYEGLYSLQHRGQDAAGI-VTAGNKGRLYQCKGSGMVA 56

Query: 229 ALEELLQERSIELSVEECVDSHCGIAHTRWATHGEPSAVNSHPQRSGEDNAFVVIHNGII 408
            +    Q R +  S+        GI H R+ T G  +   + P         V+ HNG +
Sbjct: 57  DVFSQHQLRQLVGSM--------GIGHLRYPTAGSCAHSEAQPFYVNSPYGLVLGHNGNL 108

Query: 409 TNYKEVKTFLENKGY 453
            N  E++ FL+ + +
Sbjct: 109 INGPELRRFLDTEAH 123


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +1

Query: 418 KEVKTFLENKGYIFESQTDTEAIAKL 495
           K+  +FLEN+GY+ ESQ  TE  A L
Sbjct: 549 KKAVSFLENEGYL-ESQISTELFANL 573


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/80 (26%), Positives = 38/80 (47%)
 Frame = +1

Query: 259 IELSVEECVDSHCGIAHTRWATHGEPSAVNSHPQRSGEDNAFVVIHNGIITNYKEVKTFL 438
           ++L+  E V SH  + H+R++T+  PS   + P R       +  HNG I   +  K ++
Sbjct: 265 LDLNNAEYV-SHFALVHSRFSTNTFPSWDRAQPMR-------LAAHNGEINTLRGNKNWM 316

Query: 439 ENKGYIFESQTDTEAIAKLI 498
             +  + +S    E  A L+
Sbjct: 317 HAREGLMKSSRFGEEFASLL 336


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 592 KSRYFPNECVATRRGSPLLVGIKTPRR 672
           K RY+PN+ +AT +  PL + I +  R
Sbjct: 201 KGRYYPNKALATDKDPPLYLHIVSHNR 227


>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
 Frame = +1

Query: 28  DPSVLFTMCGIFAYINHLTPKTRREI------LELLVNGLKRLEYRGYDSAGVAVDSAD 186
           DP+VL  +  +F  +++LTPK   ++        LL+N L  L  R + +   A +S D
Sbjct: 34  DPTVLLLLLKVFVQLSYLTPKPFSQLNALPLFYPLLLNFLISLMVRMFFNLPTAGESLD 92


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 181 ADQKDIAVVKRSGKVAALEELLQERSIELSVEEC 282
           A  K +   K+SGKV   EE++QE+ + +  E+C
Sbjct: 553 AMNKKLEKDKQSGKVLD-EEIIQEKQLVIRFEDC 585


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,493
Number of Sequences: 5004
Number of extensions: 50793
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)