Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1575
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0198 - 1556215-1556298,1556412-1556580,1556666-1556921,155... 126 1e-29
05_04_0403 + 20997191-20998816 51 8e-07
01_06_1510 - 37859664-37861319 51 1e-06
11_05_0109 + 19126849-19126917,19129883-19130620 33 0.22
12_01_0759 + 6894556-6894628,6894653-6894738,6895039-6895121,689... 33 0.30
04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435... 29 2.8
04_04_0006 - 22102663-22103705,22105659-22105671 29 3.6
07_03_1521 + 27419859-27420106,27422050-27423363,27423885-274243... 28 8.4
>11_01_0198 -
1556215-1556298,1556412-1556580,1556666-1556921,
1557000-1557114,1557191-1557441,1557565-1557892,
1558197-1558358,1558846-1558985,1559325-1559436,
1560028-1560200,1560411-1560506,1560687-1560930
Length = 709
Score = 126 bits (305), Expect = 1e-29
Identities = 61/136 (44%), Positives = 87/136 (63%), Gaps = 4/136 (2%)
Frame = +1
Query: 262 ELSVEECVDSHCGIAHTRWATHGEPSAVNSHPQRSGEDNAFVVIHNGIITNYKEVKTFLE 441
+++++ + H GIAHTRWATHG P+ NSHPQ SG + F+V+HNGIITN + +K L
Sbjct: 119 DVNLDAAFNVHAGIAHTRWATHGVPAPRNSHPQSSGAGDEFLVVHNGIITNNEVLKETLI 178
Query: 442 NKGYIFESQTDTEAIAKLIHHIYNQ-HKES---SFXXXXXXXXXXXXGAFALCFKSRYFP 609
G+ FES TDTE I KL ++++ H E +F GA+AL FKS ++P
Sbjct: 179 RHGFTFESDTDTEVIPKLAKFVFDKAHDEEGDVTFSQVVMEVMRQLEGAYALIFKSPHYP 238
Query: 610 NECVATRRGSPLLVGI 657
NE +A +RGS L++G+
Sbjct: 239 NELIACKRGSTLILGV 254
Score = 70.9 bits (166), Expect = 9e-13
Identities = 41/87 (47%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Frame = +1
Query: 49 MCGIFAYINHLTPKTRREILELLVNGLKRLEYRGYDSAGVAVDSADQKDIAVVKRSGKVA 228
MCGIFAY+N+ + RR ILE+L NGL+RLEYRGYDS+G+AVD AD A A
Sbjct: 1 MCGIFAYLNYNVSRERRYILEVLFNGLRRLEYRGYDSSGIAVD-ADVPSCASTSAVPPYA 59
Query: 229 ALEELL--QERSIELSVEECVDSHCGI 303
L+ QE IE V + G+
Sbjct: 60 GAPPLVFRQEGKIENLVRSVYSAILGL 86
>05_04_0403 + 20997191-20998816
Length = 541
Score = 51.2 bits (117), Expect = 8e-07
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Frame = +1
Query: 124 GLKRLEYRGYDSAGVAVDSADQKDIAVVKRSGKVAALEELLQERSIELSVEECVDSHCGI 303
GL++L++RG + AG+ D K + V G VA ++ + + S+ I
Sbjct: 98 GLQKLQHRGEEGAGIVAVGGDGK-LKSVTGLGLVA---DVFGDPARLASLP----GPAAI 149
Query: 304 AHTRWATHGEPSAV-NSHPQRSG-EDNAFVVIHNGIITNYKEVKTFLENKGYIFESQTDT 477
H R++T G +++ N P +G V HNG + NY+ ++ LE +G IF + +DT
Sbjct: 150 GHVRYSTAGAAASLRNVQPFLAGYRFGQVAVAHNGNLVNYQALRNKLEARGSIFNTSSDT 209
Query: 478 EAIAKLI 498
E I LI
Sbjct: 210 EVILHLI 216
>01_06_1510 - 37859664-37861319
Length = 551
Score = 50.8 bits (116), Expect = 1e-06
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 2/151 (1%)
Frame = +1
Query: 52 CGIFAYINHLTPKTRREILELLVNGLKRLEYRGYDSAGVAVDSADQKDIAVVKRSGKVAA 231
CG+F + + L GL++L++RG + AG+A D +K +
Sbjct: 86 CGVFGVVGD------PDATSLCYLGLQKLQHRGEEGAGIAAAGDD----GTIKLERGLGL 135
Query: 232 LEELLQERSIELSVEECVDSHCGIAHTRWATHGEPSAV-NSHPQRSG-EDNAFVVIHNGI 405
+ ++ + + L + I H R++T G +++ N P +G V HNG
Sbjct: 136 VGDVFGDPA-RLGK---LPGQAAIGHVRYSTAGAAASLRNVQPFLAGYRFGQLAVAHNGN 191
Query: 406 ITNYKEVKTFLENKGYIFESQTDTEAIAKLI 498
+ NY+ ++ LE +G IF + +DTE I LI
Sbjct: 192 LVNYQALRNKLEAQGSIFSTSSDTEVILHLI 222
>11_05_0109 + 19126849-19126917,19129883-19130620
Length = 268
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +1
Query: 352 HPQRSGEDNAFVVIHNGIITNYKEVKTFLENKGYIFESQTDTEAIAKLIHHI 507
HP E AFV + +I K+V L +KG I EA+AKLI+ I
Sbjct: 145 HPGAGNEVMAFVYFMDNLIDTAKDV-ALLRSKGIITSGLGSDEAVAKLINKI 195
>12_01_0759 +
6894556-6894628,6894653-6894738,6895039-6895121,
6895278-6895650
Length = 204
Score = 32.7 bits (71), Expect = 0.30
Identities = 19/68 (27%), Positives = 38/68 (55%)
Frame = +1
Query: 46 TMCGIFAYINHLTPKTRREILELLVNGLKRLEYRGYDSAGVAVDSADQKDIAVVKRSGKV 225
TMCG+ + + P+ R ++ ++ L+ + +DS +AV ++++A R GKV
Sbjct: 113 TMCGMISQYHLERPEGVRNLMYIITKRLRMEGFVIFDS--IAVYRQFEEEMAGYLREGKV 170
Query: 226 AALEELLQ 249
LE+++Q
Sbjct: 171 TYLEDIVQ 178
>04_04_0179 -
23342764-23342973,23343185-23343340,23343535-23343593,
23344150-23344226,23344309-23344587,23344800-23344885,
23344960-23345027,23345721-23345904,23346071-23346204,
23346776-23347039,23347613-23347677,23347833-23348407,
23348501-23348680,23348765-23348928,23349008-23349261,
23349405-23349562,23349808-23349948,23350176-23350282,
23350651-23350737,23350812-23350901,23350974-23351055,
23351370-23351561,23351748-23351816,23351959-23352294,
23352694-23352837,23352963-23353126,23353817-23353883
Length = 1463
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 274 EECVDSHCGIAHTRWATHGEPSAVNSHPQRSGEDNAFVVIHNGII 408
EE C A RW E +A S P+R E+ V + NG++
Sbjct: 20 EESAARRCEAA--RWLRQMEAAAAESLPERPSEEEFCVALRNGLV 62
>04_04_0006 - 22102663-22103705,22105659-22105671
Length = 351
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 305 LTLVGQLMGNQVLLILIHNGLARTMLLLLFIT 400
LTL +G Q+L ++I+ GL R + +L+F T
Sbjct: 248 LTLYVIFVGGQILSLVINKGLRRRIYMLIFAT 279
>07_03_1521 +
27419859-27420106,27422050-27423363,27423885-27424308,
27424540-27424968,27425228-27425305,27426581-27426839,
27428542-27428552
Length = 920
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 395 ITVSLQTTRKSRLFLRTKATYLN 463
+TV LQ T KS LFLR + YL+
Sbjct: 483 VTVELQRTSKSSLFLRQCSLYLH 505
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,472,462
Number of Sequences: 37544
Number of extensions: 318770
Number of successful extensions: 813
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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