Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1575
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66511-3|CAC42276.1| 712|Caenorhabditis elegans Hypothetical pr... 266 1e-71
Z66511-2|CAA91315.1| 725|Caenorhabditis elegans Hypothetical pr... 266 1e-71
Z68336-3|CAA92735.1| 710|Caenorhabditis elegans Hypothetical pr... 258 3e-69
Z35663-3|CAA84723.1| 480|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 30 1.9
U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein... 29 4.3
U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein... 29 4.3
AC006651-8|AAX22286.1| 716|Caenorhabditis elegans Hypothetical ... 29 4.3
AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical ... 29 4.3
AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical ... 29 4.3
Z81127-8|CAB03393.2| 495|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z77652-14|CAB01123.2| 495|Caenorhabditis elegans Hypothetical p... 28 7.6
>Z66511-3|CAC42276.1| 712|Caenorhabditis elegans Hypothetical
protein F07A11.2b protein.
Length = 712
Score = 266 bits (652), Expect = 1e-71
Identities = 120/224 (53%), Positives = 165/224 (73%), Gaps = 5/224 (2%)
Frame = +1
Query: 49 MCGIFAYINHLTPKTRREILELLVNGLKRLEYRGYDSAGVAVDSADQ-----KDIAVVKR 213
MCGIFAY+N LTPK R EI+++LV GL+R+EYRGYDSAG+A+D +++ +A++++
Sbjct: 1 MCGIFAYLNFLTPKKRSEIVDILVQGLQRMEYRGYDSAGIAIDGSNEIESPHSSVALLRK 60
Query: 214 SGKVAALEELLQERSIELSVEECVDSHCGIAHTRWATHGEPSAVNSHPQRSGEDNAFVVI 393
+GKV+ L + ++E S +L ++ + HCGIAHTRWATHG P VNSHP RS + N F+V+
Sbjct: 61 AGKVSVLSDFIKESSSDLDMDMEYNIHCGIAHTRWATHGSPRDVNSHPHRSNDKNEFLVV 120
Query: 394 HNGIITNYKEVKTFLENKGYIFESQTDTEAIAKLIHHIYNQHKESSFXXXXXXXXXXXXG 573
HNGIITNY+E+K +LE KG+ FES+TDTE IAKL HI++++ + SF G
Sbjct: 121 HNGIITNYREIKEYLEKKGHKFESETDTEVIAKLAQHIHDRYPDFSFRQLVETVIQQLEG 180
Query: 574 AFALCFKSRYFPNECVATRRGSPLLVGIKTPRRLSSNHVPIMYT 705
AFAL FKS FP + VA+RRGSPLLVGIK+ RL +NH P+ ++
Sbjct: 181 AFALAFKSSRFPGQLVASRRGSPLLVGIKSNSRLQTNHFPVSFS 224
>Z66511-2|CAA91315.1| 725|Caenorhabditis elegans Hypothetical
protein F07A11.2a protein.
Length = 725
Score = 266 bits (652), Expect = 1e-71
Identities = 120/224 (53%), Positives = 165/224 (73%), Gaps = 5/224 (2%)
Frame = +1
Query: 49 MCGIFAYINHLTPKTRREILELLVNGLKRLEYRGYDSAGVAVDSADQ-----KDIAVVKR 213
MCGIFAY+N LTPK R EI+++LV GL+R+EYRGYDSAG+A+D +++ +A++++
Sbjct: 1 MCGIFAYLNFLTPKKRSEIVDILVQGLQRMEYRGYDSAGIAIDGSNEIESPHSSVALLRK 60
Query: 214 SGKVAALEELLQERSIELSVEECVDSHCGIAHTRWATHGEPSAVNSHPQRSGEDNAFVVI 393
+GKV+ L + ++E S +L ++ + HCGIAHTRWATHG P VNSHP RS + N F+V+
Sbjct: 61 AGKVSVLSDFIKESSSDLDMDMEYNIHCGIAHTRWATHGSPRDVNSHPHRSNDKNEFLVV 120
Query: 394 HNGIITNYKEVKTFLENKGYIFESQTDTEAIAKLIHHIYNQHKESSFXXXXXXXXXXXXG 573
HNGIITNY+E+K +LE KG+ FES+TDTE IAKL HI++++ + SF G
Sbjct: 121 HNGIITNYREIKEYLEKKGHKFESETDTEVIAKLAQHIHDRYPDFSFRQLVETVIQQLEG 180
Query: 574 AFALCFKSRYFPNECVATRRGSPLLVGIKTPRRLSSNHVPIMYT 705
AFAL FKS FP + VA+RRGSPLLVGIK+ RL +NH P+ ++
Sbjct: 181 AFALAFKSSRFPGQLVASRRGSPLLVGIKSNSRLQTNHFPVSFS 224
>Z68336-3|CAA92735.1| 710|Caenorhabditis elegans Hypothetical
protein F22B3.4 protein.
Length = 710
Score = 258 bits (632), Expect = 3e-69
Identities = 117/224 (52%), Positives = 164/224 (73%), Gaps = 5/224 (2%)
Frame = +1
Query: 49 MCGIFAYINHLTPKTRREILELLVNGLKRLEYRGYDSAGVAVDSADQKD-----IAVVKR 213
MCGIFAY+N L PK R EI+++LV GL+R+EYRGYDSAG+A+D ++ + IA++++
Sbjct: 1 MCGIFAYLNFLAPKKRSEIVDILVQGLQRMEYRGYDSAGIAIDGSNDIENPHSKIALLRK 60
Query: 214 SGKVAALEELLQERSIELSVEECVDSHCGIAHTRWATHGEPSAVNSHPQRSGEDNAFVVI 393
GKV+ L + ++E + +L+++ + HCGIAHTRWATHG P VNSHP RS ++N F+V+
Sbjct: 61 RGKVSVLNDYIKENNEKLNMDMEYNIHCGIAHTRWATHGSPRDVNSHPHRSNDNNEFLVV 120
Query: 394 HNGIITNYKEVKTFLENKGYIFESQTDTEAIAKLIHHIYNQHKESSFXXXXXXXXXXXXG 573
HNGIITNY+E+K +LE KG+ FES+TDTE IAKL H+++++ + SF G
Sbjct: 121 HNGIITNYREIKEYLEKKGHKFESETDTEVIAKLTQHVHDRYPDFSFRQLVETVIQQLEG 180
Query: 574 AFALCFKSRYFPNECVATRRGSPLLVGIKTPRRLSSNHVPIMYT 705
AFAL FKS FP + VA+RRGSPLLVGIK+ L ++H P+ Y+
Sbjct: 181 AFALAFKSSRFPGQLVASRRGSPLLVGIKSNSTLHTSHFPVSYS 224
>Z35663-3|CAA84723.1| 480|Caenorhabditis elegans Hypothetical
protein T04A8.5 protein.
Length = 480
Score = 44.0 bits (99), Expect = 1e-04
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 4/154 (2%)
Frame = +1
Query: 49 MCGIFAYINHLTPKTRREILELLVNGLKRLEYRGYDSAG-VAVDSADQKDIAVVKRSGKV 225
MCGIF + + L NGL L++RG +S G V D + + ++K G V
Sbjct: 1 MCGIFGIV---AAGNYEHLNVLAANGLAALQHRGTESTGLVGSDGITRDHVEIIKGHGLV 57
Query: 226 AALEELLQERSIELSVEECVDSHCGIAHTRWATHGEP-SAVNS-HPQRSGEDNAFVVI-H 396
+++ E +I + + I H R++T G+ S +N P V I H
Sbjct: 58 ---RDVITEDNISRMNGQSII----IGHNRYSTAGKKKSGINCVQPFVVYTAMGTVAIAH 110
Query: 397 NGIITNYKEVKTFLENKGYIFESQTDTEAIAKLI 498
NG + + K+ + + ++G + TD+E IA++I
Sbjct: 111 NGELVDAKQKRKEVLHEGVGLSTDTDSELIAQMI 144
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
protein C27H6.1 protein.
Length = 1657
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 235 EELLQERSIELSVEECVDSHCGIAHTRWATHGEPSAVNSHPQRSGEDNAF-VVIHNGIIT 411
E +++ ++E +E D+H H + T P+ + Q+ G +NA+ + G I
Sbjct: 351 ESVVKTENVENEKQE--DTHISEGHVEYGTEESPAVTDGSYQQDGTENAYDPNAYPGYIW 408
Query: 412 NYK 420
NY+
Sbjct: 409 NYE 411
>U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein
1.0, isoform b protein.
Length = 154
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Frame = +1
Query: 331 EPSAVNSHPQRSGEDNAFVVIHN---GIITNYKEVKTFLENKGYIFESQTDTEAIAKLIH 501
+P V S S D + V G+ TNY EVK ++N + T A
Sbjct: 51 KPKKVESTFPESTHDTYYAVARGHSVGVFTNYNEVKEHIKNYPQPLHKKWSTLEEAIAYF 110
Query: 502 HIYNQHKESS 531
H Y + KE +
Sbjct: 111 HKYYEGKEEA 120
>U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein
1.0, isoform a protein.
Length = 155
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Frame = +1
Query: 331 EPSAVNSHPQRSGEDNAFVVIHN---GIITNYKEVKTFLENKGYIFESQTDTEAIAKLIH 501
+P V S S D + V G+ TNY EVK ++N + T A
Sbjct: 51 KPKKVESTFPESTHDTYYAVARGHSVGVFTNYNEVKEHIKNYPQPLHKKWSTLEEAIAYF 110
Query: 502 HIYNQHKESS 531
H Y + KE +
Sbjct: 111 HKYYEGKEEA 120
>AC006651-8|AAX22286.1| 716|Caenorhabditis elegans Hypothetical
protein H06I04.3b protein.
Length = 716
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 88 KTRREILELLVNGLKRLEYRGYDSAGVAVDSADQK--DIAVVKRSGKVAALEELLQERSI 261
K ++++L+ LKR E + + DQ+ + ++++ ++A + + Q
Sbjct: 374 KKKKKMLKAKARVLKRRELKMIIDGDEGPQAEDQEVFQLKKIRKAKELAEITKDTQAPDF 433
Query: 262 ELSVEECVDSHCGIAHTRWATHGE 333
++ + D G+ W THGE
Sbjct: 434 DMMEDGDSDEEEGLGEGEWETHGE 457
>AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical
protein H06I04.3c protein.
Length = 786
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 88 KTRREILELLVNGLKRLEYRGYDSAGVAVDSADQK--DIAVVKRSGKVAALEELLQERSI 261
K ++++L+ LKR E + + DQ+ + ++++ ++A + + Q
Sbjct: 374 KKKKKMLKAKARVLKRRELKMIIDGDEGPQAEDQEVFQLKKIRKAKELAEITKDTQAPDF 433
Query: 262 ELSVEECVDSHCGIAHTRWATHGE 333
++ + D G+ W THGE
Sbjct: 434 DMMEDGDSDEEEGLGEGEWETHGE 457
>AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical
protein H06I04.3a protein.
Length = 833
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 88 KTRREILELLVNGLKRLEYRGYDSAGVAVDSADQK--DIAVVKRSGKVAALEELLQERSI 261
K ++++L+ LKR E + + DQ+ + ++++ ++A + + Q
Sbjct: 374 KKKKKMLKAKARVLKRRELKMIIDGDEGPQAEDQEVFQLKKIRKAKELAEITKDTQAPDF 433
Query: 262 ELSVEECVDSHCGIAHTRWATHGE 333
++ + D G+ W THGE
Sbjct: 434 DMMEDGDSDEEEGLGEGEWETHGE 457
>Z81127-8|CAB03393.2| 495|Caenorhabditis elegans Hypothetical
protein C06B3.3 protein.
Length = 495
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 172 VDSADQKDIAVVKRSGKVAALEELLQERSIELSVEECVDSHCGIAHTR-WATHGEPSAVN 348
+D+ ++ I V + +L + + + ++ E V H I + W + EP+ +
Sbjct: 328 MDTVQKELIKVTNGGSRQLSLRDKTETPYLNATIAE-VQRHASILNINFWRINNEPTVIG 386
Query: 349 SHPQRSG 369
HP SG
Sbjct: 387 GHPVDSG 393
>Z77652-14|CAB01123.2| 495|Caenorhabditis elegans Hypothetical
protein C06B3.3 protein.
Length = 495
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 172 VDSADQKDIAVVKRSGKVAALEELLQERSIELSVEECVDSHCGIAHTR-WATHGEPSAVN 348
+D+ ++ I V + +L + + + ++ E V H I + W + EP+ +
Sbjct: 328 MDTVQKELIKVTNGGSRQLSLRDKTETPYLNATIAE-VQRHASILNINFWRINNEPTVIG 386
Query: 349 SHPQRSG 369
HP SG
Sbjct: 387 GHPVDSG 393
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,191,284
Number of Sequences: 27780
Number of extensions: 287376
Number of successful extensions: 746
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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