Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1574
(468 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 1.4
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 3.3
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 26 3.3
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 25 4.4
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 25 4.4
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 25 4.4
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 5.8
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 25 5.8
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.1 bits (57), Expect = 1.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 363 YHAGPAPVTYHAGPAGGCYHSGPAAK 440
+H GP +H GP +H GP K
Sbjct: 400 HHKGPKDKEHHKGPKDKEHHQGPKEK 425
Score = 26.6 bits (56), Expect = 1.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 363 YHAGPAPVTYHAGPAGGCYHSGPAAK 440
+H GP +H GP +H GP K
Sbjct: 355 HHRGPEDKEHHKGPKDKEHHKGPKDK 380
Score = 26.6 bits (56), Expect = 1.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 363 YHAGPAPVTYHAGPAGGCYHSGPAAK 440
+H GP +H GP +H GP K
Sbjct: 364 HHKGPKDKEHHKGPKDKEHHKGPKDK 389
Score = 26.6 bits (56), Expect = 1.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 363 YHAGPAPVTYHAGPAGGCYHSGPAAK 440
+H GP +H GP +H GP K
Sbjct: 373 HHKGPKDKEHHKGPKDKEHHKGPKDK 398
Score = 26.6 bits (56), Expect = 1.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 363 YHAGPAPVTYHAGPAGGCYHSGPAAK 440
+H GP +H GP +H GP K
Sbjct: 382 HHKGPKDKEHHKGPKDKEHHKGPKDK 407
Score = 26.6 bits (56), Expect = 1.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 363 YHAGPAPVTYHAGPAGGCYHSGPAAK 440
+H GP +H GP +H GP K
Sbjct: 391 HHKGPKDKEHHKGPKDKEHHKGPKDK 416
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 3.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 199 GQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPVPPGDQLG 65
GQ ++ P+R N+H+GF + V + + +S+ G QLG
Sbjct: 781 GQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA----GKQLG 821
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 145 RHGVRCSGRKLPQQMSSGPVPPGD 74
R+ + CSGRKL +Q +G GD
Sbjct: 59 RNEITCSGRKLYRQKGTGHARVGD 82
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 25.4 bits (53), Expect = 4.4
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = -3
Query: 331 YGSSVIDSLGPDHHASCSG--KRRTQQT--NSGLXQHGTLQGQHGKPQGQR 191
YG SV + P HH SG +R+ Q+ G+ + G+ QGQR
Sbjct: 79 YGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQR 129
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 322 SVIDSLGPDHHASCSGKRRTQQTNSGLXQHGTLQGQH 212
S++DS+ D+ CS Q +SGL + L H
Sbjct: 108 SLLDSMDFDNQRQCSDLESAQLGDSGLLKSTILSNSH 144
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 25.4 bits (53), Expect = 4.4
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = -3
Query: 331 YGSSVIDSLGPDHHASCSG--KRRTQQT--NSGLXQHGTLQGQHGKPQGQR 191
YG SV + P HH SG +R+ Q+ G+ + G+ QGQR
Sbjct: 79 YGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQR 129
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.0 bits (52), Expect = 5.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 379 AGPAW*VHGCSDG 341
A PAW +HGC G
Sbjct: 514 AAPAWYIHGCYSG 526
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 5.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 18 QNVFQINSTVRICGVVPSWSPGG 86
QN+F+I ++I G+ S+SP G
Sbjct: 276 QNIFEIFEILKILGIPASFSPIG 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,621,089
Number of Sequences: 5004
Number of extensions: 25348
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -