Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1574
(468 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 35 0.033
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 28 2.9
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 28 2.9
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 27 6.7
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 27 6.7
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 27 6.7
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 27 6.7
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 27 6.7
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 8.9
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 34.7 bits (76), Expect = 0.033
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = -3
Query: 304 GPDHHASCSGKRRTQQTNSGLXQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHG 137
G H SCSG R + + G HG+ G G G G HRG RHG
Sbjct: 287 GHGRHGSCSGSPRGRHGHGGHGGHGSRSGSPGGRHGHGGS-------GHHRGGRHG 335
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 220 GQHGKPQGQRGKLQEPQRHNEHRGFRHGVR 131
G HG P + P RH H HG R
Sbjct: 395 GHHGPPHHHHHDGRSPSRHGHHHHHHHGCR 424
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical
protein F53F1.5 protein.
Length = 215
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +3
Query: 363 YHAGPAPVTYHAGPAGGCYHSGPA 434
Y +GPA A PAGG Y SGPA
Sbjct: 128 YQSGPA--FGGAAPAGGAYQSGPA 149
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +3
Query: 363 YHAGPAPVTYHAGPAGGCYHSGPA 434
Y A PA V A P GG Y SGPA
Sbjct: 112 YQAAPAFVG--AAPVGGAYQSGPA 133
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2
protein.
Length = 231
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +3
Query: 363 YHAGPAPVTYHAGPAGGCYHSGPA 434
Y +GPA A PAGG Y SGPA
Sbjct: 128 YQSGPA--FGGAAPAGGAYQSGPA 149
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +3
Query: 363 YHAGPAPVTYHAGPAGGCYHSGPA 434
Y +GPA A PAGG Y SGPA
Sbjct: 144 YQSGPA--FGGAAPAGGAYQSGPA 165
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +3
Query: 363 YHAGPAPVTYHAGPAGGCYHSGPA 434
Y A PA V A P GG Y SGPA
Sbjct: 112 YQAAPAFVG--AAPVGGAYQSGPA 133
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 27.1 bits (57), Expect = 6.7
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -3
Query: 232 GTLQGQHGKPQGQRGKLQ-EPQRHNEHRGFRHGVRCSGRKLPQ----QMSSGPVPPGDQL 68
G Q + G+PQ Q+G + PQ++N+ + GVR G Q Q + P PP Q
Sbjct: 478 GVYQNRMGRPQNQQGGPRGPPQQYNQVA--QGGVRMQGPPRTQNPGVQQQNVPRPPQQQQ 535
Query: 67 GTTP 56
P
Sbjct: 536 QQRP 539
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 27.1 bits (57), Expect = 6.7
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -3
Query: 232 GTLQGQHGKPQGQRGKLQ-EPQRHNEHRGFRHGVRCSGRKLPQ----QMSSGPVPPGDQL 68
G Q + G+PQ Q+G + PQ++N+ + GVR G Q Q + P PP Q
Sbjct: 418 GVYQNRMGRPQNQQGGPRGPPQQYNQVA--QGGVRMQGPPRTQNPGVQQQNVPRPPQQQQ 475
Query: 67 GTTP 56
P
Sbjct: 476 QQRP 479
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 27.1 bits (57), Expect = 6.7
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -3
Query: 232 GTLQGQHGKPQGQRGKLQ-EPQRHNEHRGFRHGVRCSGRKLPQ----QMSSGPVPPGDQL 68
G Q + G+PQ Q+G + PQ++N+ + GVR G Q Q + P PP Q
Sbjct: 415 GVYQNRMGRPQNQQGGPRGPPQQYNQVA--QGGVRMQGPPRTQNPGVQQQNVPRPPQQQQ 472
Query: 67 GTTP 56
P
Sbjct: 473 QQRP 476
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 27.1 bits (57), Expect = 6.7
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -3
Query: 232 GTLQGQHGKPQGQRGKLQ-EPQRHNEHRGFRHGVRCSGRKLPQ----QMSSGPVPPGDQL 68
G Q + G+PQ Q+G + PQ++N+ + GVR G Q Q + P PP Q
Sbjct: 478 GVYQNRMGRPQNQQGGPRGPPQQYNQVA--QGGVRMQGPPRTQNPGVQQQNVPRPPQQQQ 535
Query: 67 GTTP 56
P
Sbjct: 536 QQRP 539
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Frame = +3
Query: 366 HAGPAPVTYHA-------GPAGGCYHSGPAAKIARH 452
HAGP P+++H GP G GPA + RH
Sbjct: 160 HAGPGPMSHHTNMGNVLPGPPGPPGPPGPAGRDGRH 195
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/54 (25%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Frame = -3
Query: 295 HHASCSGKRRTQQTNSGLXQHGTLQGQHGKPQGQRGKLQE-PQRHNEHRGFRHG 137
HH R + G G+HG G G+ P H H HG
Sbjct: 395 HHDEHGVHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHGHG 448
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,444,156
Number of Sequences: 27780
Number of extensions: 167460
Number of successful extensions: 554
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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