Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1573
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   2.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   4.5  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   6.0  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   7.9  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   7.9  

>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = -3

Query: 558 THNTTHVNDPSAGSPTETLVT---TFTSS 481
           T  T  V +P+AG+ TET+V+   TFTS+
Sbjct: 479 TSGTVEVVEPTAGTITETIVSGSKTFTST 507



 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = -3

Query: 558 THNTTHVNDPSAGSPTETLVT---TFTSS 481
           T  T  V +P+AG+ TET+V+   TFTS+
Sbjct: 689 TSGTVEVVEPTAGTITETIVSGSKTFTST 717


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -3

Query: 558  THNTTHVNDPSAGSPTETLVTTFT-SSK*SSLVNFPTTPTAVKPPRVGPKTSLN 400
            TH    V + +      + +T F   +  +SL    T PT   PP +  KTSLN
Sbjct: 867  THEINSVENKAETVSNNSKITNFDIPNDATSLPTIITHPTPPPPPPLPVKTSLN 920


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 4   ICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 105
           + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 58  VFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 324 LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 223
           L G+P ++G++  P    EG++    G    EN+
Sbjct: 292 LYGVPSMYGVVTLPYSVREGINIFLDGHIPTENL 325


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 570 YLHITHNTTHVNDPSAGSPTETLVTTFT 487
           YLH T   T+ +D S  SPT   V+  T
Sbjct: 87  YLHPTPPYTNFDDESPSSPTHPSVSNIT 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,221
Number of Sequences: 5004
Number of extensions: 44988
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)