Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1573
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    28   5.4  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z82078-9|CAE11308.1|  949|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z82078-8|CAB04948.2|  947|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z70208-7|CAA94139.1|  287|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    27   7.2  
AL023844-13|CAE11312.1|  949|Caenorhabditis elegans Hypothetical...    27   7.2  
AL023844-12|CAA19535.2|  947|Caenorhabditis elegans Hypothetical...    27   7.2  

>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = -3

Query: 531 PSAGSPTETLVTTFTSSK*SSLVNFPTTPTAV----KPPRVGPKTSLNHSIGSS 382
           P+   PT   VTT ++    + V  PTTPT V      P   P T+   ++G+S
Sbjct: 462 PTTPGPTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTS 515


>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 546 THVNDPSAGSPTETLVTTFTSSK*SSLVNFPTTPT 442
           +H   P+   PT+T  TT T+ + + +V  PTT T
Sbjct: 276 SHTTPPTQTPPTQTPPTTTTTRRVTVVVTSPTTTT 310


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
 Frame = -2

Query: 298 DNCKPQSPARRSFSGLPGPLGQ----GE--HADSFSVA 203
           ++C+  +PAR+   G PGP GQ    GE  H+D+ S A
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQPGEPGHSDTSSTA 227


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -3

Query: 531 PSAGSPTETLVTTFTSSK*SSLVNFPTTPTAV----KPPRVGPKTSLNHSIGS 385
           P+   PT   VTT ++    + V  PTTPT V      P   P T+   ++G+
Sbjct: 462 PTTPGPTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGT 514


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -3

Query: 531 PSAGSPTETLVTTFTSSK*SSLVNFPTTPTAV----KPPRVGPKTSLNHSIGS 385
           P+   PT   VTT ++    + V  PTTPT V      P   P T+   ++G+
Sbjct: 462 PTTPGPTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGT 514


>Z82078-9|CAE11308.1|  949|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11b protein.
          Length = 949

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 510 ETLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 385
           +  VT  TS K     +   TP + KPPR  P+T L+    S
Sbjct: 112 DEFVTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 153


>Z82078-8|CAB04948.2|  947|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11a protein.
          Length = 947

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 510 ETLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 385
           +  VT  TS K     +   TP + KPPR  P+T L+    S
Sbjct: 110 DEFVTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 151


>Z70208-7|CAA94139.1|  287|Caenorhabditis elegans Hypothetical
           protein F54B11.7 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 456 PTTPTAVKPPRVGPKTSLNHS-IGSSD 379
           PTTP A KP    PKTSL+ S  GS+D
Sbjct: 69  PTTPPA-KPKEPAPKTSLSKSDSGSAD 94


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 324 LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 223
           L G+P ++G++  P+   EG++    G    ENM
Sbjct: 300 LYGVPGVYGVVTLPSGVREGINMFLEGFIRTENM 333


>AL023844-13|CAE11312.1|  949|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11b protein.
          Length = 949

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 510 ETLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 385
           +  VT  TS K     +   TP + KPPR  P+T L+    S
Sbjct: 112 DEFVTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 153


>AL023844-12|CAA19535.2|  947|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11a protein.
          Length = 947

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 510 ETLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 385
           +  VT  TS K     +   TP + KPPR  P+T L+    S
Sbjct: 110 DEFVTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,719,364
Number of Sequences: 27780
Number of extensions: 273225
Number of successful extensions: 788
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)