Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1572
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    29   0.68 
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    28   1.6  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    28   1.6  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    27   2.8  
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    27   2.8  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   4.8  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    26   6.4  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    26   6.4  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   8.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   8.4  

>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 437 SSRRYRGRVSRLYTEQAPSLPPQQF 363
           + R  RG+V RLYTE+A SL  ++F
Sbjct: 354 AGRTMRGKVFRLYTEKAYSLMKEEF 378


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 167 SLHRYLRNYVLHKIL--CHRCPFCLVSSLRLPSVCLSPPW 54
           SL     N V H +L  C +     +SS ++P VC+SP W
Sbjct: 194 SLQMTEENPVSHAVLYDCSQETLKKISSAQVPIVCVSPKW 233


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 462 PYLSPTPLKRKFPLPSRNTSNTQY 533
           P++SP+P+  K  +PS N  N+ +
Sbjct: 212 PFVSPSPISMKMDMPSLNDRNSSH 235


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 601 LTKSKSKCPLPTPLRRKSLMK*KCPFPQPYTVEKRSQ 711
           L  +   C L  PL  K+L   + PF  PY + + S+
Sbjct: 5   LFSNSETCSLSDPLTSKTLSSIENPFDDPYILSEESE 41


>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 508 DGKGNFLFNGVGLRYGHFHLIGYFLLDGIGDV 413
           DG  +FL N  GLRYG         +D  G++
Sbjct: 110 DGTASFLINPYGLRYGEITASSLIKVDEDGNI 141


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 614 SQSAHSLHR*EENPL*SESARFPSPTLSRKGPSSSG 721
           SQ AHSLH+   N   S +  FP  T   K  +++G
Sbjct: 14  SQLAHSLHKKANNSSSSTTGAFPQLTSFTKPTATNG 49


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 21/68 (30%), Positives = 25/68 (36%)
 Frame = +3

Query: 498 PLPSRNTSNTQYTYLSPTPLKRKYLMKSRSTFDKPYEVKVKVPTPYTVEKKIPYEVKVPV 677
           PLPS   S   YTY  P P   K       T+ K Y+    V       K+I  E +   
Sbjct: 258 PLPSP-PSGPIYTYTYPKPAYEKIDQIGEGTYGKVYKAINTVTGDLVALKRIRLEQEKDG 316

Query: 678 SPALHCRE 701
            P    RE
Sbjct: 317 FPITTVRE 324


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 659 IRDFLLNGVGSGHFDFDFV 603
           +R  + NG G G FDF FV
Sbjct: 557 VRFVVANGAGKGGFDFSFV 575


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 674  GHFHFIRDFLLNGVGSGHFDFDF 606
            G F  IR  + NG G G F+FDF
Sbjct: 1164 GSFLPIRLIVANGGGKGGFNFDF 1186


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 80  PSVCLSPPWQRQPRPTMPPK*PCTS 6
           P   L PP    PRP++PP  P ++
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASA 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,950
Number of Sequences: 5004
Number of extensions: 47768
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)