Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1572
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 31 0.71
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026... 31 1.2
03_02_0163 - 6056959-6058989 31 1.2
04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347 30 2.2
02_04_0275 - 21469391-21470650 30 2.2
11_06_0543 + 24792110-24792229,24792316-24792521,24793770-247944... 29 2.9
04_03_0904 + 20717005-20718087 29 2.9
11_06_0610 - 25449085-25453284 29 3.8
11_01_0154 + 1281434-1281725,1281923-1281987,1282112-1282175,128... 29 5.0
06_03_0079 - 16301056-16301611,16301745-16301906,16306776-163071... 29 5.0
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581... 29 5.0
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 28 6.6
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 28 6.6
06_03_1097 - 27570037-27570262,27570575-27570730,27570763-275708... 28 8.8
03_05_0576 + 25765137-25766420 28 8.8
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 31.5 bits (68), Expect = 0.71
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = +3
Query: 489 RKFPLPSRNTSNTQYTYLSPTPLKRKYLMKSR----STFDKPYEVKVKVPTPYTVEKKIP 656
RKF P T ++ YT S TP KSR S + + VP+P + +
Sbjct: 53 RKFLEPEVPTDSSLYTSTSATPEPPTIRQKSRNLSPSISHQASDSFSPVPSPLSSGRFRI 112
Query: 657 YEVKVPVSPALHCREKVPVPV 719
+K +P + EKVPVPV
Sbjct: 113 NHMKSGGNPVMTIEEKVPVPV 133
>12_02_0410 +
18701258-18701327,18701398-18701630,18701782-18702639,
18703006-18703865,18704285-18704395,18704486-18704567,
18704643-18704735,18704795-18704989
Length = 833
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +3
Query: 459 CPYLSPTPLKRKFPLPSRNTSNTQYTYLSPTPLKRKYLMKSRSTFDKPYEVKVKVPTPYT 638
C L +PL + PL + Q SPTPL R+ + +S P + +V P P T
Sbjct: 456 CTTLPGSPLPQISPLRGPSPPPQQAAPNSPTPLPRQPSLAPQSYLAPPLDERVPPPQPDT 515
Query: 639 VEKK 650
+++
Sbjct: 516 SKEQ 519
>03_02_0163 - 6056959-6058989
Length = 676
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +3
Query: 360 SKLLRW*RRCL-FRIQSRNTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTQYT 536
S LL W R + Q +N SP P+ + ++ P P P P R+++ ++Y
Sbjct: 5 SSLLSWPHRAISLSFQPKNPSPSPATARVSVQDP-----PPPPSDANPSPGRSSNTSRYV 59
Query: 537 YLSPTPLKRKYLMKSRS 587
+++P + L ++R+
Sbjct: 60 WVNPNSPRAAGLARARA 76
>04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347
Length = 137
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +2
Query: 29 ASLAVVAFAKEEKGTPKAVEEKKQDKR 109
ASL V AKEEK K EEKK DK+
Sbjct: 65 ASLLSVGPAKEEKKEEKKPEEKKDDKK 91
>02_04_0275 - 21469391-21470650
Length = 419
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/42 (26%), Positives = 27/42 (64%)
Frame = +3
Query: 405 SRNTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTQ 530
+R+T+P+ R +P R + +L + +KR+ P P + +++++
Sbjct: 183 ARSTAPMAPRVNFPQRTRTQFLPSSGVKRRMPSPPQVSASSE 224
>11_06_0543 +
24792110-24792229,24792316-24792521,24793770-24794462,
24794538-24794717,24794793-24795084,24795166-24795375
Length = 566
Score = 29.5 bits (63), Expect = 2.9
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = +3
Query: 438 KYPMR*KCPYLSPTPLKRKFPLPSRNTSNTQYTYLSPTPLKRKYLMK-SRSTFDKPYEVK 614
K P P+ SP+P + PS + Q S P KR+ L K S + P +
Sbjct: 109 KMPTPPPLPHKSPSPPLAQRKSPSPQEAAHQSLASSDPPKKRRRLCKASHMSEPPPLKKT 168
Query: 615 VKVPTPYTVEK--KIPYEVK 668
K P P E K+P EV+
Sbjct: 169 KKTPLPNRSEPSLKVPVEVQ 188
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.5 bits (63), Expect = 2.9
Identities = 27/88 (30%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Frame = +3
Query: 420 PIPSRRKYPMR*KCPYLSPTPLKRKF-PLPSRNTSNTQYTYLSPTPLKRKYLMKSRSTFD 596
P P+ Y P PTP + P P N T PTP Y + + T
Sbjct: 265 PKPTPTPYTPPTYKPQPKPTPTPTPYTPTPKPNPPPTYKPQPKPTPTPTPYKPQPKPT-P 323
Query: 597 KPYEVKVKVPTP--YTVEKKIPYEVKVP 674
PY K PTP YT PY P
Sbjct: 324 SPYTPK-PTPTPPTYTPTPTPPYHKPPP 350
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/91 (25%), Positives = 35/91 (38%)
Frame = +3
Query: 414 TSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTQYTYLSPTPLKRKYLMKSRSTF 593
+SP P + P + SP P ++ P P + T +SP P + + +
Sbjct: 848 SSPPPEKSSSPPP-EAHVSSPPPPEKSPPPPETKSPPTLTPEISPPPEGKSPPSHTPESS 906
Query: 594 DKPYEVKVKVPTPYTVEKKIPYEVKVPVSPA 686
P + PTP +E VP SPA
Sbjct: 907 SPPSKESEPPPTPTPKSSPPSHEEYVPPSPA 937
>11_01_0154 +
1281434-1281725,1281923-1281987,1282112-1282175,
1282303-1282449,1282583-1282677,1284358-1284465
Length = 256
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 95 SSLRLPSVCLSPPWQRQPRPTMPPK*PCTS 6
+++ PS+ S P R+P +PP PC+S
Sbjct: 3 AAVATPSLLFSSPTPRRPSSCLPPPPPCSS 32
>06_03_0079 -
16301056-16301611,16301745-16301906,16306776-16307134,
16307372-16307884
Length = 529
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 13 HGYFGGIVGRGCL--CQGGERHTEGSRREETRQKG 111
HGY GG GRG GG + E + R E R +G
Sbjct: 335 HGYTGGADGRGQYRGSDGGRKDGEATPRREIRVRG 369
>06_01_0778 +
5816588-5816885,5817554-5817615,5818764-5818905,
5819969-5820064,5820147-5820266,5820401-5820663,
5821507-5821617
Length = 363
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 386 PSLPPQQF*CARGVHDDRGGSRLRWQL 306
P LPP+ C VH D GG+ +RW L
Sbjct: 247 PPLPPE---CNAQVHTDYGGAAVRWGL 270
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 16 GYFGGIVGRGCLCQGG 63
GYF I+G CLC GG
Sbjct: 258 GYFAPILGYNCLCDGG 273
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 384 RCLFRIQSRNTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPS 509
+CL + + P+P R +P + P PTP+ +P P+
Sbjct: 37 KCLMCVCDVDPHPLPPSRHHPPPPEEPEPEPTPVNHHYPPPT 78
>06_03_1097 -
27570037-27570262,27570575-27570730,27570763-27570881,
27572154-27572236,27574991-27575041,27575218-27575674,
27576139-27576228,27576672-27576701
Length = 403
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 125 LCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTM 30
L HR P L S R + S WQ+QPR M
Sbjct: 301 LVHRLPQALRFSNRFSCILSSARWQQQPRDGM 332
>03_05_0576 + 25765137-25766420
Length = 427
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 77 SVCLSPPWQRQPRPTMPP 24
+V +SPP Q +PRP +PP
Sbjct: 98 AVSVSPPTQPRPRPELPP 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,516,515
Number of Sequences: 37544
Number of extensions: 357479
Number of successful extensions: 1167
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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