Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1572
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83224-1|CAB05720.1|  994|Caenorhabditis elegans Hypothetical pr...    37   0.013
Z79754-14|CAB02102.1|  994|Caenorhabditis elegans Hypothetical p...    37   0.013
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    31   0.64 
AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical ...    29   2.6  
AC006795-3|AAF59494.1|  369|Caenorhabditis elegans Hypothetical ...    29   2.6  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    28   7.8  
AF067609-11|AAC17532.2|  252|Caenorhabditis elegans Hypothetical...    28   7.8  
AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical...    28   7.8  

>Z83224-1|CAB05720.1|  994|Caenorhabditis elegans Hypothetical protein
            F25H2.13 protein.
          Length = 994

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +3

Query: 468  LSPTPL---KRKFPLPSRNTSNTQYTYLSPTPLKRKYLMKSRSTFDKPYEVKVKVPT 629
            LS  PL   KRKF + +   S +  T  S  P K+K L+ +R+T    Y+  +++PT
Sbjct: 864  LSSIPLESNKRKFKIETPGPSTSTLTQKSEPPKKKKILLLTRNTLPDEYQKAIEIPT 920


>Z79754-14|CAB02102.1|  994|Caenorhabditis elegans Hypothetical
            protein F25H2.13 protein.
          Length = 994

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +3

Query: 468  LSPTPL---KRKFPLPSRNTSNTQYTYLSPTPLKRKYLMKSRSTFDKPYEVKVKVPT 629
            LS  PL   KRKF + +   S +  T  S  P K+K L+ +R+T    Y+  +++PT
Sbjct: 864  LSSIPLESNKRKFKIETPGPSTSTLTQKSEPPKKKKILLLTRNTLPDEYQKAIEIPT 920


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
           protein F35A5.1 protein.
          Length = 1274

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = +3

Query: 420 PIPSRRKYP-MR*KCPYLSPTPLKRKFPLPSRNTSNTQYTYLSPTPLKRKYLMKSRSTFD 596
           P P+ RK P ++ K P  S  P+    P P++     +   + PTP+K     K +  ++
Sbjct: 229 PEPATRKVPALKKKEPSTSVKPVSD--PSPTKKVPVKKEPEVPPTPIKNP-TKKWKPPWE 285

Query: 597 KPYEVKVKVPTPYTVEKKIPYEVKVPVSPALHCREKVP 710
               V+ +V  P   EKK P   K   +PA   R+  P
Sbjct: 286 DETPVE-EVKEPPVPEKKAPVLKKKDPAPAAKARDPSP 322


>AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical
           protein C41D11.4 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +3

Query: 465 YLSPTPLKRKFPLPSRNTSNTQYTYLSPTPLKRKYLMKSRSTFDKPYEVKVKVPTP 632
           ++  +P K+    P +          S +PLK++Y+       ++  E++  VPTP
Sbjct: 203 FVPKSPTKKPITSPIKKRVRQDSENRSTSPLKKRYISSFSIRLEEEKEIEKAVPTP 258


>AC006795-3|AAF59494.1|  369|Caenorhabditis elegans Hypothetical
           protein Y50D4B.5 protein.
          Length = 369

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/70 (22%), Positives = 32/70 (45%)
 Frame = +3

Query: 471 SPTPLKRKFPLPSRNTSNTQYTYLSPTPLKRKYLMKSRSTFDKPYEVKVKVPTPYTVEKK 650
           SP   K +FP+PS +  +T+  + SP      +  +  +  ++ +  K  + T  T    
Sbjct: 111 SPPTTKTEFPIPSSSNFSTETEFNSPIKRTETFNEEESNATNETFLSKEPISTFSTTITA 170

Query: 651 IPYEVKVPVS 680
           +P   + P+S
Sbjct: 171 LPVSGERPIS 180


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
 Frame = +3

Query: 420 PIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTQYTYLSPTPL---KRKYLMKSRST 590
           PIP    +P     P L P P+    P+P     +  +    P P    K K   K    
Sbjct: 134 PIPKPMPFPK----PMLFPKPMPFPKPMPKSKPKSEPFPNPMPFPKPMPKPKPKPKPMPK 189

Query: 591 FD-KPYEVKVKVPTPYTVEKKIPYEVKVPVSPALHCREKVPVPV 719
              KP+   +  P P  + K +P+   +P     H  +  P P+
Sbjct: 190 HKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPMPKHKPKPFPKPM 233



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/80 (25%), Positives = 33/80 (41%)
 Frame = +3

Query: 420 PIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTQYTYLSPTPLKRKYLMKSRSTFDK 599
           P+P  +  P     P L P P+    P+P     +  +    P P K K + K +    K
Sbjct: 68  PMPKHKPKPF--PKPMLFPKPMPFPKPMPKSKPKSEPFPNPMPFP-KPKPMPKHK---PK 121

Query: 600 PYEVKVKVPTPYTVEKKIPY 659
           P+   +  P P  + K +P+
Sbjct: 122 PFPKPMLFPKPMPIPKPMPF 141



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 3/105 (2%)
 Frame = +3

Query: 411 NTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTQYTYLSPTPLKRKYLMKSR-- 584
           N  P P  +  P     P+  P    +  P+P          +  P P   K + KS+  
Sbjct: 105 NPMPFPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMLFPKPMPFP-KPMPKSKPK 163

Query: 585 -STFDKPYEVKVKVPTPYTVEKKIPYEVKVPVSPALHCREKVPVP 716
              F  P      +P P    K +P     P    +   + +P+P
Sbjct: 164 SEPFPNPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPIP 208


>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical protein
            F40F11.2b protein.
          Length = 1607

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 462  PYLSPTPLKRKF--PLPSRNTSNTQ--YTYLSPTPLKRKYLMKSRSTFDKPYEVKVKVPT 629
            P   P P K  F  P P+R   +    +  LSP P   +Y  +S STFD   E +  + +
Sbjct: 868  PEAEPEPKKDNFAEPEPARGDISPLIGFPQLSPIPSPSRYRNESESTFDWKDEDESPLLS 927

Query: 630  PYT 638
            P T
Sbjct: 928  PET 930


>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical protein
            F40F11.2a protein.
          Length = 1593

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 462  PYLSPTPLKRKF--PLPSRNTSNTQ--YTYLSPTPLKRKYLMKSRSTFDKPYEVKVKVPT 629
            P   P P K  F  P P+R   +    +  LSP P   +Y  +S STFD   E +  + +
Sbjct: 854  PEAEPEPKKDNFAEPEPARGDISPLIGFPQLSPIPSPSRYRNESESTFDWKDEDESPLLS 913

Query: 630  PYT 638
            P T
Sbjct: 914  PET 916


>U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical
           protein F35A5.5 protein.
          Length = 125

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 600 PYEVKVKVPTPYTVEKKIPYEVKVPVSPALHCREKVPVPVEI 725
           P  + + +P P  V   +P  V VP+   +     +PVPV +
Sbjct: 2   PPPIPIPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPV 43



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 600 PYEVKVKVPTPYTVEKKIPYEVKVPVSPALHCREKVPVPVE 722
           P  +   VP P  V + +P  + +P+   +     VPVPV+
Sbjct: 6   PIPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPVPVQ 46


>Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical
           protein F53B6.6 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 172 AVAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLGKGNHGQRCHQNNR 14
           +++F ++SE+  S  S VI +  +L  LF C+   FL+  + N     H + R
Sbjct: 553 SLSFQSSSEVCLSKTSTVIFSTAILLALFCCVTVKFLVTRQRNRQLLHHASKR 605


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 169 VAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLG 53
           +  IAT  ++S+I + ++  P+ +F    C RC  +  G
Sbjct: 283 LCLIATHGLLSTITTIMVHKPYRVFFFILCRRCLLMPAG 321


>AF067609-11|AAC17532.2|  252|Caenorhabditis elegans Hypothetical
           protein C23H5.1 protein.
          Length = 252

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 674 GHFHFIRDFLLNGVGSGHFDFDFVR 600
           GH    ++ L  G G+GH+ FDF+R
Sbjct: 32  GHILVGKEVLDVGCGNGHYSFDFLR 56


>AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical
           protein Y48G9A.1 protein.
          Length = 1725

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 474 PTPLKRKFPLPSRNTSNTQYTYLSPTPLKRKYLMKSRSTF 593
           PT   RK P  S N +N     +SP+PL R+    +  TF
Sbjct: 211 PTIFNRKIPKKSLNYTNFADECVSPSPLVRQSAAHAMVTF 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,423,917
Number of Sequences: 27780
Number of extensions: 276543
Number of successful extensions: 917
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)