Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1569
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    29   0.63 
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    28   1.1  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.9  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   4.5  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    26   5.9  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    26   5.9  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   7.8  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   7.8  

>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 49  SLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQ 156
           S+ F+P+S P P+DT    D+    +  + D  S Q
Sbjct: 418 SVQFHPESTPGPRDTEFLFDVFIDVVKRSADAKSLQ 453


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 529 QSVDPVHVELVDSEVERRASLPPSDALPPVTPMGS*RLDQRPTS 660
           +S+ P H+  +D  + R  S+  S+ALP V    S   DQ P +
Sbjct: 628 KSLPPKHLPSLDETISREMSIASSEALPQVEKSNS---DQPPVA 668


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 393 SYSQIGYGSNYAPPRRPLRPTRG 461
           SYSQ  Y     PP+ P  P+RG
Sbjct: 96  SYSQPSYSQPSQPPKEPALPSRG 118


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 396 YSQIGYGSNYAPPRRPLRPTRG 461
           YS+ GY     PPR  L P++G
Sbjct: 898 YSRGGYSRGSVPPRETLAPSKG 919


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +1

Query: 58  FNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASI 237
           FNP+   S   T   I  +TSH+ S+++  S   +  + L      +DI E+  +    I
Sbjct: 59  FNPND--SQPQTLTRIHDITSHLPSSIEEYSVYSLLHERLWSLHSFEDIHEIFISLGNYI 116

Query: 238 R-AYDSYPTAENRI 276
              YDS   A + +
Sbjct: 117 EGVYDSEEEAPHML 130


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 577 VLPHCLLILHEQGPRIECW 521
           ++P C + L+E+GPR+  W
Sbjct: 22  LIPKCTIDLYEKGPRLGGW 40


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 70  SIPSPQDTAEAIDILTSHITSTLD 141
           S+PSP  +AE ++ LT H+ S +D
Sbjct: 241 SLPSPLFSAEFLNGLTDHMDSGID 264


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 46  PSLPFN--PDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDI-RELL 216
           PSL  N    S+P+P  +A +++++  H T+ L       +        KLS  + +E L
Sbjct: 306 PSLSTNNTATSVPAPYSSAASVNVVPGHATTILHHEESSALPPTAAWA-KLSPSVLQERL 364

Query: 217 RA 222
           RA
Sbjct: 365 RA 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,937
Number of Sequences: 5004
Number of extensions: 56028
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)