Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1569
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U21319-7|AAL16307.1|  469|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.     27   9.6  
AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.     27   9.6  

>Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical
           protein C15C6.3 protein.
          Length = 541

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +1

Query: 466 DDDEKAELLADTLQTQCTP---STQSVDPVHVELVDSEVERRASLPPSDALPP 615
           D+DE AE +A       +P   S++S  P   + VD  +E   + PP    PP
Sbjct: 431 DEDEPAEPIAQKAAAPVSPNPASSRSASPEPAQQVDELLESEEAAPPPPPPPP 483


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical
           protein C41A3.1 protein.
          Length = 7829

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
 Frame = +1

Query: 433 LVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPS 600
           +V P+GRLAAFD      + A++       S Q  +     +H E V S        P  
Sbjct: 202 MVSPNGRLAAFDRSANGFVRAESFAVAVLCSKQFAEENNLLIHCECVGSAFNSDGKTPSL 261

Query: 601 DALPPVT 621
            A  P++
Sbjct: 262 TAPNPIS 268


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical
           protein D2045.2 protein.
          Length = 1792

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 22/81 (27%), Positives = 38/81 (46%)
 Frame = +1

Query: 121 HITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDSYPTAENRIRMRALQRD 300
           H  +++D   K V  E  LH    S D+  L+R     + AY S+P A ++      Q  
Sbjct: 602 HGDTSIDMIEKAV--EMTLHAVTDSTDVH-LVRIAACFLTAYRSFPQASSQEPSDRFQFA 658

Query: 301 VKSRIAEVRDARWSDFLEGLA 363
           ++  + ++RD+   +F   LA
Sbjct: 659 IQPCVQKLRDSTRMEFSTSLA 679


>Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical
           protein C32A3.1b protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 40  DPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDF 174
           + P+ PF  D++P+P+D     D+   H    L R   ++   ++
Sbjct: 15  EEPTAPFVNDNLPNPEDEPTIGDLNAFHSGEELHRQRSELARANY 59


>Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical
           protein C32A3.1a protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 40  DPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDF 174
           + P+ PF  D++P+P+D     D+   H    L R   ++   ++
Sbjct: 37  EEPTAPFVNDNLPNPEDEPTIGDLNAFHSGEELHRQRSELARANY 81


>U21319-7|AAL16307.1|  469|Caenorhabditis elegans Hypothetical
           protein C30G12.1 protein.
          Length = 469

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 176 FTASNCPTILGNSLEL--RTPRYAPTTVILPRKIVFECVPYNAT 301
           FT    P I   ++    RT    PTT   PR+I  + +P++ T
Sbjct: 285 FTTKTNPQITTTTMTTTTRTSTAIPTTTTTPRQISLQTIPFSTT 328


>AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 40  DPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDF 174
           + P+ PF  D++P+P+D     D+   H    L R   ++   ++
Sbjct: 15  EEPTAPFVNDNLPNPEDEPTIGDLNAFHSGEELHRQRSELARANY 59


>AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 40  DPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDF 174
           + P+ PF  D++P+P+D     D+   H    L R   ++   ++
Sbjct: 37  EEPTAPFVNDNLPNPEDEPTIGDLNAFHSGEELHRQRSELARANY 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,850,871
Number of Sequences: 27780
Number of extensions: 340306
Number of successful extensions: 978
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)