Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1569
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.90 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.3  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
 Frame = +1

Query: 394 RTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQC---TPSTQSV--DPVHVEL 558
           R  K  TV   P  V P  + A    +EKA+   D   +     +P +  +  D + V++
Sbjct: 243 RLKKCLTVGMRPECVVPEYQCAVKRKEEKAQKEKDKPNSTTMNGSPGSGGIRSDQMGVKI 302

Query: 559 VDSEVERRASLPPSDALPPVTPMG 630
             +E E  ++   S  L PV+P G
Sbjct: 303 EPAEAESLSTSGSSGILTPVSPYG 326


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 63  PGLYPVSSGYR*SHRHLNVTHHLDIR*VIETSCSGGLPSPLQI 191
           PG   +   Y+   +HLN  H LD R   +      + S L+I
Sbjct: 286 PGCEVICEDYQAFLKHLNTEHTLDDRSTAQARVRMQVVSQLEI 328


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 218 ELRTPRYAPTTVILPRKIVF 277
           ++R P+Y P T+I+P  + +
Sbjct: 21  KVRGPKYLPLTLIVPITLTY 40


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 256 PTAENRIRMRALQRDVKSRI 315
           PT   + RMRAL  D  SR+
Sbjct: 388 PTPAQKARMRALNIDRVSRV 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,196
Number of Sequences: 438
Number of extensions: 4287
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)