Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1568
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 31 0.54
06_01_0350 + 2534422-2535615 31 0.72
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 30 0.95
12_02_0407 - 18654134-18654172,18654913-18655803 30 1.3
03_03_0059 + 14149796-14150350,14152303-14152433,14153479-141535... 29 2.2
05_06_0098 + 25560158-25560925 29 2.9
01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305 29 2.9
08_02_0479 + 17627605-17627839,17628965-17629107,17630018-176301... 28 3.8
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 28 3.8
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 28 3.8
09_04_0362 - 16953108-16953155,16953478-16953562,16953626-169537... 28 5.1
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820... 28 5.1
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 28 5.1
08_01_0030 + 222748-222829,223224-223448,223800-224204,224773-22... 27 6.7
04_04_0783 - 28040828-28041615,28041942-28043589 27 6.7
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 27 6.7
01_01_0880 + 6903535-6903932,6904931-6905022,6905601-6905680,690... 27 6.7
06_01_0368 + 2645007-2645317,2645422-2645509,2648927-2649183,264... 27 8.8
05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664 27 8.8
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 27 8.8
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 27 8.8
01_01_0012 + 71903-72935,73468-73981,74619-76008 27 8.8
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 31.1 bits (67), Expect = 0.54
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -2
Query: 264 PSPEFSRSA-ESIRTPPQM------RCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAAS 106
P P+ SRS ES R P S + + GFHG L+ KL PDL +
Sbjct: 168 PPPKRSRSKQESSRASPMKLIKLYPHMSGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWL 226
Query: 105 SGHFGLPRRTLVFKDEGTI 49
HF LVF G I
Sbjct: 227 MEHFNPATNQLVFPGRGAI 245
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 0.72
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 166 PWNSNAQAEKKTLPGPLGGVFRP 98
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 30.3 bits (65), Expect = 0.95
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 442 HPLAVQTRHAPVLRANPYSEVTDPICRLPL 353
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 23 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 187
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>03_03_0059 +
14149796-14150350,14152303-14152433,14153479-14153520,
14153632-14153740,14154262-14154340,14154437-14154733,
14154820-14154932,14155375-14155482,14155554-14155616,
14155698-14155865,14156283-14156348
Length = 576
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 455 PAPSASACRPNPTRPGPQSQSLFRSY-GSNLPTS 357
PAPSA+A P +PG Q F Y S LP S
Sbjct: 39 PAPSAAAAAAAPAKPGTPKQHKFPFYLPSPLPAS 72
>05_06_0098 + 25560158-25560925
Length = 255
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -1
Query: 451 HRPHPLAVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 272
HRP P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
>01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305
Length = 196
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -3
Query: 446 SASACRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNR 285
S SA P+P +P P S SL R+ S +Y G W A + R
Sbjct: 13 SLSASLPSPAQPAPASLSL-RAVSPRARLSASYAAFPIGGIGAWAAATPASSGR 65
>08_02_0479 +
17627605-17627839,17628965-17629107,17630018-17630137,
17630497-17630721
Length = 240
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 461 PDPAPSASACRPNPTRPGPQSQSLFR 384
P P+P A+A P+P P ++ LFR
Sbjct: 20 PRPSPYAAAAAPSPDAAAPPAELLFR 45
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 350 YIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 225
+ +L+ RG P +PAA RRD ++P + Q P G
Sbjct: 28 HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 448 RPHPLAVQTRHAPVLRANPYSEVTDP 371
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>09_04_0362 -
16953108-16953155,16953478-16953562,16953626-16953702,
16954601-16954641,16955140-16955644,16955897-16956316
Length = 391
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 470 YCLPDPAPSASACRPNPTRPGPQSQSLFRSYGS-NLPTSLTYIILSTRGSSP 318
+ P APS+S+ PT P S +LF + GS L T + T GS+P
Sbjct: 229 FSTPASAPSSSSLFSTPTTP-TLSSNLFGTSGSAQLSTPFGTVSTPTLGSTP 279
>02_05_0300 +
27681204-27681656,27681745-27681840,27681933-27682022,
27682126-27682227,27682310-27682456,27683608-27683748,
27683749-27683808,27685133-27685230,27685308-27685410,
27685954-27686037
Length = 457
Score = 27.9 bits (59), Expect = 5.1
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +2
Query: 176 EGRYGSEREEHRICGGVRILSADLENSGEGCT-WRC-RAGSYPYPQQVSKVKSL*SIE*C 349
+GR+G++R HR+ G +A SG+ C WR R +P P S++ +
Sbjct: 6 DGRFGNKRVHHRL--GPANGAASSSTSGKVCIHWRAGRCNRFPCPYLHSELPEATAKRPS 63
Query: 350 R*GKSANWIRNFGIRIGSEDRGVSGLDG 433
+ G N RN G RG G G
Sbjct: 64 QSGGGGNVWRN-PHSGGGGGRGAGGAGG 90
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -2
Query: 303 GYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPSI 172
G+ P+ H P P+ S R PP R S RSE P +
Sbjct: 26 GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPL 70
>08_01_0030 +
222748-222829,223224-223448,223800-224204,224773-225389
Length = 442
Score = 27.5 bits (58), Expect = 6.7
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -3
Query: 428 PNPTRPGPQSQSLFRSYG-SNLPTSLTYIILSTRGSSPWRPAADMGTNRRDISTYIPHLN 252
P P R P SQS R+Y S+ P + Y + +SP+ + + ++S+ H
Sbjct: 303 PRPIRRHPSSQSTSRAYSISSAPRN--YNLQRYYTNSPYISTSRSNVDLANMSSQWSHT- 359
Query: 251 FQGPQRVSGHRRKCGALRVPNHI 183
P + S H + G L +P +I
Sbjct: 360 ---PHQASMHSLRSGHLSLPINI 379
>04_04_0783 - 28040828-28041615,28041942-28043589
Length = 811
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -3
Query: 461 PDPAPSASACRPNPTRPGPQSQSLF-RSYGSNLPTSLTYIILSTRGSSPWRPAA 303
PDPA + + PNP P + ++ F R S P + + S P R +A
Sbjct: 27 PDPASTPTLVLPNPAFPNKRKRTGFRRKLPSGSPAAPVAVAASPSAQPPPRASA 80
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 389 IRIGSEDRGVSGLDGKRMRTVPGLVNNIKKKKKNSRGGPV 508
IR +E GL GKRM PG++ K+ ++ R PV
Sbjct: 9 IRYEAEITSSRGLFGKRMTVAPGVLGQDWKQIEDGRRRPV 48
>01_01_0880 +
6903535-6903932,6904931-6905022,6905601-6905680,
6905885-6905926,6906001-6906128,6906530-6906710,
6906801-6906979,6907469-6907717,6907950-6908193
Length = 530
Score = 27.5 bits (58), Expect = 6.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 464 LPDPAPSASACRPNPTRPGP 405
LP P+PS ++ P+P+ P P
Sbjct: 29 LPSPSPSPTSASPSPSPPAP 48
>06_01_0368 +
2645007-2645317,2645422-2645509,2648927-2649183,
2649453-2649504,2649527-2649838
Length = 339
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 461 PDPA-PSASACRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAAD 300
P P P +A P PT P P+ S+ SY + +L Y++L+ G+S P D
Sbjct: 198 PRPTGPRPAAHVPRPTPPSPRKVSVSGSY---VGLAL-YVVLAAAGTSSRGPPLD 248
>05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664
Length = 248
Score = 27.1 bits (57), Expect = 8.8
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +2
Query: 2 GNPVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEG 181
G V + PGSG V +IVP V G W R + F F + +E
Sbjct: 13 GCGVRVIVPGSGGVQVIVPGG--GGVHPGG-DWRRTTKSRRNR-FRFSARPEIKVAALEE 68
Query: 182 RYGS-EREEH 208
+GS E EEH
Sbjct: 69 EHGSGEEEEH 78
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 454 RHRPHPLAVQTRHAPVLRANP 392
+++ H + VQ H+PVL+ NP
Sbjct: 336 KNQDHSVPVQKNHSPVLKTNP 356
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -1
Query: 427 QTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIW 296
+ RH P++ + EV+ + L L Y ++ L + +LL +W
Sbjct: 100 ELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLW 143
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 264 PSPEFSRSAESIRTPPQMRCSSRSEPYLPSI 172
PSP RS R+P + R S RS Y P +
Sbjct: 518 PSPSARRSKSRSRSPIKYRRSRRSRSYSPPV 548
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,201,148
Number of Sequences: 37544
Number of extensions: 398848
Number of successful extensions: 1692
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1683
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -