Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1567
         (324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0186 + 1454533-1454710,1455299-1455420,1455508-1455806,145...    28   1.5  
08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724     27   2.6  
01_06_0878 - 32669790-32669846,32670206-32670299,32670384-326704...    27   3.4  
01_03_0229 + 13995610-13995844,13996391-13996445,13998126-139982...    26   5.9  
07_03_0264 - 15958690-15958910,15959410-15959484,15959547-159597...    26   7.8  
07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,853...    26   7.8  
03_05_0680 + 26682010-26682030,26682675-26682869,26684203-266844...    26   7.8  
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422...    26   7.8  

>06_01_0186 +
           1454533-1454710,1455299-1455420,1455508-1455806,
           1455846-1455933,1456015-1456096,1457130-1457242
          Length = 293

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 44  ALWRPLAPADFTEHHMVHLLHHTRQPQSSKATPP 145
           A WR  A AD   HH  H L  +  P +    PP
Sbjct: 4   AYWRYAAAADAARHHHHHQLPLSAAPAAGMPAPP 37


>08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724
          Length = 302

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 31  VILLCALATARAGGLYGASYGAPIASYAA 117
           V+L C     R G L+G  YG P A + A
Sbjct: 102 VVLTCVDCFLRGGSLHGFEYGVPPAVFLA 130


>01_06_0878 -
           32669790-32669846,32670206-32670299,32670384-32670499,
           32670786-32671096,32672243-32672364,32672754-32672870,
           32672982-32673054,32673416-32673542,32673659-32673727,
           32673811-32674170,32674493-32674633
          Length = 528

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 277 LNKKLEHMPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSMQHTL 146
           +N+ LEHM +  +R +LSR  + +  + V S  S    S   TL
Sbjct: 318 MNEMLEHMDAYYLRRILSRCPEQLKQKQVNSDSSDKKDSPLQTL 361


>01_03_0229 +
           13995610-13995844,13996391-13996445,13998126-13998211,
           13999484-13999671,14000111-14000169,14000618-14000646,
           14000742-14001138,14001569-14002028
          Length = 502

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +2

Query: 53  RPLA---PADFTEHHMVHLLHHTRQPQSSKATPPQ 148
           RPLA   P DF  +H  HL +   QP S+     Q
Sbjct: 286 RPLATVHPIDFHHNHWTHLPNSYSQPNSNNGVAEQ 320


>07_03_0264 -
           15958690-15958910,15959410-15959484,15959547-15959775,
           15960312-15960587,15962109-15962369,15962632-15962781,
           15963555-15963591,15963958-15964024,15964228-15964291,
           15964643-15964812,15965046-15965124,15965576-15965733,
           15965862-15966030,15966531-15966602,15966977-15967018,
           15967245-15967488,15968782-15968963
          Length = 831

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 119 AAAYDAIGAPYDAP*SPPARAVAKAHRSI 33
           AAA  A  +P   P SPPAR+ + A  S+
Sbjct: 41  AAAAAAASSPPPLPASPPARSFSSAFSSV 69


>07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,
            8530533-8530878,8530964-8531101,8531197-8531322,
            8531422-8531634,8531721-8531863,8531891-8532009,
            8532099-8532295,8532379-8532729,8532811-8533395
          Length = 1143

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 153  IRWGGVAFDDW 121
            +RW GVA DDW
Sbjct: 973  MRWSGVAIDDW 983


>03_05_0680 +
           26682010-26682030,26682675-26682869,26684203-26684428,
           26684602-26685221
          Length = 353

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 92  VHLLHHTRQPQSSKATPPQ 148
           +HLLHH ++PQ     P Q
Sbjct: 104 MHLLHHKKKPQEDMQDPVQ 122


>01_03_0076 -
           12241408-12241545,12241719-12241790,12242173-12242289,
           12243307-12245127,12245361-12245810
          Length = 865

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 254 HMLQLLIQPTLRLPSTRATPPLP 322
           H L  +  PT  LPS+ A PP P
Sbjct: 111 HFLNGVATPTSHLPSSAAAPPPP 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,384,138
Number of Sequences: 37544
Number of extensions: 89001
Number of successful extensions: 400
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)