Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1567
         (324 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    26   5.4  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    26   7.2  

>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 53  RPLAPADFTEHHMVHLLHHTRQPQS 127
           RP+AP  F E +M H  HH   PQS
Sbjct: 35  RPIAPGAFAEPYMHHNPHH---PQS 56


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical protein
            C18H2.1 protein.
          Length = 1770

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 56   PLAPADFTEHHMVHLLHHTRQPQSSKATPPQR 151
            PL     T HH  +     RQP+S++  P +R
Sbjct: 1519 PLQTTQVTAHHAGNASRPRRQPKSTQCVPRKR 1550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,872,852
Number of Sequences: 27780
Number of extensions: 62677
Number of successful extensions: 222
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)