Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1566
         (743 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY333418-1|AAP97744.1|  124|Drosophila melanogaster polyA-bindin...    37   0.025
AY061203-1|AAL28751.1|  124|Drosophila melanogaster LD15606p pro...    37   0.025
AE014297-1602|AAF54880.1|  124|Drosophila melanogaster CG12358-P...    37   0.025
BT001293-1|AAN71980.1|  520|Drosophila melanogaster AT10318p pro...    29   8.8  
AE014297-4091|AAN14404.2|  769|Drosophila melanogaster CG31068-P...    29   8.8  

>AY333418-1|AAP97744.1|  124|Drosophila melanogaster polyA-binding
           protein-interactingprotein 2 protein.
          Length = 124

 Score = 37.1 bits (82), Expect = 0.025
 Identities = 13/16 (81%), Positives = 16/16 (100%)
 Frame = +2

Query: 641 DFADYMWMENEEKFDK 688
           DF++YMWMENEE+FDK
Sbjct: 32  DFSEYMWMENEEEFDK 47


>AY061203-1|AAL28751.1|  124|Drosophila melanogaster LD15606p
           protein.
          Length = 124

 Score = 37.1 bits (82), Expect = 0.025
 Identities = 13/16 (81%), Positives = 16/16 (100%)
 Frame = +2

Query: 641 DFADYMWMENEEKFDK 688
           DF++YMWMENEE+FDK
Sbjct: 32  DFSEYMWMENEEEFDK 47


>AE014297-1602|AAF54880.1|  124|Drosophila melanogaster CG12358-PA
           protein.
          Length = 124

 Score = 37.1 bits (82), Expect = 0.025
 Identities = 13/16 (81%), Positives = 16/16 (100%)
 Frame = +2

Query: 641 DFADYMWMENEEKFDK 688
           DF++YMWMENEE+FDK
Sbjct: 32  DFSEYMWMENEEEFDK 47


>BT001293-1|AAN71980.1|  520|Drosophila melanogaster AT10318p
           protein.
          Length = 520

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 315 IWKPFQKRHFY*GKYPKSEFSVAIMKIPETSANVGAYYG 431
           I+ PF+KR  Y  + PKSEF   ++K  +T  N   + G
Sbjct: 292 IYLPFRKRRIYNLRSPKSEF--VVVKFFQTLTNCHRFQG 328


>AE014297-4091|AAN14404.2|  769|Drosophila melanogaster CG31068-PA
           protein.
          Length = 769

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 315 IWKPFQKRHFY*GKYPKSEFSVAIMKIPETSANVGAYYG 431
           I+ PF+KR  Y  + PKSEF   ++K  +T  N   + G
Sbjct: 298 IYLPFRKRRIYNLRSPKSEF--VVVKFFQTLTNCHRFQG 334


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,392,888
Number of Sequences: 53049
Number of extensions: 571343
Number of successful extensions: 1044
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)