Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1564
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    29   0.49 
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    26   4.5  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   6.0  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    25   7.9  

>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 361 CCIASDSCSCRPSFLCNCTCSPC 293
           C    +SC C+ S + NC CS C
Sbjct: 23  CQDCKESCGCKSSAVDNCKCSSC 45


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 88  HPTYSH*QTLVPFWERQHSSLSLSPS 11
           HP Y + ++  PFWE  H      P+
Sbjct: 197 HPAYENDRSWRPFWENYHGCEETDPN 222


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 124 YGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQAKSNEG 246
           YG  +S   +  +D +   + ++S  E  A GD    +N+G
Sbjct: 528 YGTTNSKKVVASYDNTDDNEYSVSKSELYATGDTNNTTNQG 568


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 313 YKGKMACKNKNRWRCSMGCK 372
           Y GK AC+N     CS GC+
Sbjct: 107 YWGKYACQNCGTSYCSKGCE 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,624
Number of Sequences: 5004
Number of extensions: 48289
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)