Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1564
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0001 - 11373469-11373862,11374072-11374264,11374414-113744... 33 0.29
05_04_0311 - 20120172-20122115 31 0.89
03_01_0646 + 4742398-4742994,4743681-4744085 31 1.2
11_01_0271 + 2039100-2041760 29 4.7
12_01_0272 + 1985348-1986036,1986142-1988020 28 6.2
05_05_0352 + 24328117-24328303,24328451-24328559,24330634-243306... 28 6.2
05_03_0597 + 16014809-16015120,16015234-16015398,16015497-160159... 28 6.2
12_02_0744 - 22704637-22705341 28 8.3
11_01_0252 + 1934505-1935032,1936001-1936957 28 8.3
10_01_0352 - 3870921-3871272,3871383-3871479,3871541-3871621,387... 28 8.3
05_04_0422 + 21122099-21122194,21122353-21122510,21122651-211228... 28 8.3
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506... 28 8.3
04_04_0765 - 27910189-27912393,27912521-27912598 28 8.3
04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819 28 8.3
>09_03_0001 -
11373469-11373862,11374072-11374264,11374414-11374482,
11374858-11374984,11375223-11375485,11375697-11375785,
11375832-11375909,11376070-11376141,11376234-11376372,
11378857-11379323,11380781-11381345,11382553-11382622
Length = 841
Score = 32.7 bits (71), Expect = 0.29
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +1
Query: 169 SATGDVNISGGE-GGAVGDAQAKSNEG--AIRTVRMINGKTFVLYKDYTYSYKGKMACK 336
+A +N+SG + G + D+ K+N G R V N + VLY Y+Y G M K
Sbjct: 433 TALEKLNLSGNQLNGPIPDSLCKNNAGQFVFRYVAKTNPELLVLYNYYSYGSDGNMCNK 491
>05_04_0311 - 20120172-20122115
Length = 647
Score = 31.1 bits (67), Expect = 0.89
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 187 NISGGEGGAVGDAQAKSNEGAIRTVRMINGKTFVLYKDYTYSYKGKMACKNKNRWR 354
+I G + GD AK + + ++ K F+L D ++ + KM +NK+ WR
Sbjct: 243 SIGGPDDTLYGDNSAKLDILQAKLEVLVRSKRFLLVLDDVWNDEAKMELENKDLWR 298
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 178 GDVNISGGEGGAVGDAQA-KSNEGAIRTVRMINGK 279
GDV+ +G +GG GDAQA KS +R +R K
Sbjct: 167 GDVDRAGDDGGGEGDAQATKSTMDGVRRLRRAKEK 201
>11_01_0271 + 2039100-2041760
Length = 886
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -1
Query: 177 SCRAIKTSHFHIRIVLSVISFVIVRA-IFIVIPHTLINKLWFHFGSDSIVLSLSLPRAE 4
SCR+ KTS + I +V +V+ ++ ++A +F P K W H +++ L L E
Sbjct: 288 SCRSFKTSIYVIALVGAVLLYIAIQAMVFFSEP----VKDWLHRAGETLQKCLKLDELE 342
>12_01_0272 + 1985348-1986036,1986142-1988020
Length = 855
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -1
Query: 177 SCRAIKTSHFHIRIVLSVISFVIVR-AIFIVIPHTLINKLWFHFGSDSIVLSLSLPRAE 4
SCR+ KTS + I +V +V+ ++ ++ +FI P K W H +++ L L E
Sbjct: 253 SCRSFKTSIYVIALVGAVLLYIAIQFMVFISEP----VKDWLHRAGETLQKCLKLDELE 307
>05_05_0352 +
24328117-24328303,24328451-24328559,24330634-24330692,
24331139-24331220,24331361-24331481,24331751-24332278,
24332724-24332831,24332934-24333131,24334043-24334234,
24336116-24336199,24336385-24336525,24336683-24336748,
24336880-24337047,24337134-24337463,24337568-24337666
Length = 823
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 172 ATGDVNISGGEGGAVGDAQAKSNEGAIRTVRMING 276
A GD ++ GG G G A ++ G R+ +++NG
Sbjct: 16 AGGDGHVEGGGAGGGGGADEDAHRGGERSPKVMNG 50
>05_03_0597 +
16014809-16015120,16015234-16015398,16015497-16015957,
16016057-16016233,16016331-16016679
Length = 487
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 136 DSNMEMTGFDGSATGDVNISGGEGGAVGDAQAKSNEGAIR 255
D+ +T ++G DV + G GG A A GAIR
Sbjct: 394 DTRAVITTYEGKHNHDVPVGRGGGGGRAPAPAPPTSGAIR 433
>12_02_0744 - 22704637-22705341
Length = 234
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 130 EDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQAKSNE 243
EDD + + G ATG + GG GG GD+ ++ E
Sbjct: 47 EDDDDRDADGAAAFATGAADGGGGGGGG-GDSHVRNGE 83
>11_01_0252 + 1934505-1935032,1936001-1936957
Length = 494
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +1
Query: 142 NMEMTGFDGSATGDVNISGGEGGAVGDAQAKSNEGAIRTVRMINGKTFVLYKDYTYSYKG 321
N M G G +G GG GGA G A + + V I + VL + YS +
Sbjct: 71 NWPMAGGGGGGSG----GGGRGGAGGGGGAPATPELVIPVSSIRYEVLVLVLQFLYSGQA 126
Query: 322 KMA 330
+A
Sbjct: 127 SVA 129
>10_01_0352 -
3870921-3871272,3871383-3871479,3871541-3871621,
3874854-3875028,3875650-3875661
Length = 238
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 127 GEDDSNMEMTGFDGSATGDVNISGGEGGAVGDA 225
G D + + +G A G + GG G VGDA
Sbjct: 127 GSDPNGVGRRAPEGRAPGCARVEGGSSGTVGDA 159
>05_04_0422 +
21122099-21122194,21122353-21122510,21122651-21122866,
21122965-21123379
Length = 294
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = -1
Query: 324 LSFVTVRVVLVQNKSFSVDHSDCSNGAFVRFSLCIADCSTFTSRNINISSC--RAIKTSH 151
++ V V+ + SV H S A +C A T + + C R+
Sbjct: 86 IATVIAFVMFLDTGGISVVHGSSSRSAAAELGICAAIFLMITHVAMAAAGCCCRSFCIPS 145
Query: 150 FHIRIVLSVISFVIVRAIFIVIPHTLINK 64
R+V ++ S+++ +F+++ H + +
Sbjct: 146 ETARVVCAITSWIVPVIVFVLLLHAAVEE 174
>04_04_0964 -
29749624-29749649,29749742-29749945,29750036-29750634,
29750742-29750826,29750914-29751562,29751568-29751643,
29753891-29753957,29754097-29754998,29756579-29756790
Length = 939
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 375 YHHPG*RLESVEGHV*TQSRCFELLSHPPRHIHQTQIMS 491
YH P +L VEG T R F +SHPP H + + S
Sbjct: 778 YHEPVKKL-IVEGDDLTVIRWFNRVSHPPARAHDSFLRS 815
>04_04_0765 - 27910189-27912393,27912521-27912598
Length = 760
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 169 SATGDVNISGGEGGAVGDAQAKSNEG 246
SA+GDV+ +GG GGA G+ +N+G
Sbjct: 79 SASGDVDPAGG-GGASGEGGGAANDG 103
>04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819
Length = 451
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 513 ITYNSFNGSLFVSDVYAVGGD*VIRSNVIVF 421
+T N+F + VYA+GGD +R V +F
Sbjct: 163 LTSNTFYHDYILLKVYAIGGDGTMRGAVAIF 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,196,122
Number of Sequences: 37544
Number of extensions: 329317
Number of successful extensions: 1161
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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