Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1564
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL110478-1|CAB54340.2|  537|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AC026301-11|AAK68891.2|  273|Caenorhabditis elegans Hypothetical...    28   7.4  
Z83120-9|CAB05589.2|  773|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81515-11|CAB04199.2|  773|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF011893-1|AAC27124.1|  773|Caenorhabditis elegans maternal-effe...    27   9.8  

>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -1

Query: 246 AFVRFSLCIADCSTFTSRNINISSCR---AIKTSHFHIRIVLSVISFVIVRAIFIVIPHT 76
           A V F+     CS  T   I + S R   + KT  +HI++ +  +   +++A+F+V+P T
Sbjct: 598 ATVFFACIFVVCSLATI--IVVQSARDTMSYKTVKYHIQVTVLFLCSCVIQALFVVLPVT 655

Query: 75  LI 70
            I
Sbjct: 656 HI 657



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = -1

Query: 240 VRFSLCIADCSTFTSRNINISS-CRAIKTSHFHIRIVLSVISFVIVRAIFIVIP--HTLI 70
           V F+     CS  T   I+ +    +++T  +H+++V S +    ++A F+V+P  H L+
Sbjct: 218 VLFAFVFVLCSITTIAIIHSAKDTMSLQTRRYHLQVVKSFLISCGIQAFFVVLPVVHILL 277

Query: 69  NKLWFHF 49
             ++F F
Sbjct: 278 -CVYFEF 283


>Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical
           protein H12I19.5b protein.
          Length = 596

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 150 FHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLSLSLPRAE 4
           F I +VLSVISF      ++ +P   I K+       +++L L  PR E
Sbjct: 327 FLISVVLSVISFEFFEKKYLRLPDRQITKICIFLFLTNVIL-LEYPRVE 374


>Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical
           protein H12I19.5a protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 150 FHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLSLSLPRAE 4
           F I +VLSVISF      ++ +P   I K+       +++L L  PR E
Sbjct: 327 FLISVVLSVISFEFFEKKYLRLPDRQITKICIFLFLTNVIL-LEYPRVE 374


>AL110478-1|CAB54340.2|  537|Caenorhabditis elegans Hypothetical
           protein Y26D4A.2 protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 187 NISGGEGGAVGDAQAKSNEGAIRTVRMINGKTFVLYKDYTYSYKGKM 327
           N SGGEG             ++    ++NGK + LY + T  Y  K+
Sbjct: 89  NASGGEGQVAFKVYTDQPSCSLNAQLLLNGKRYPLYPNDTLDYLWKI 135


>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical
           protein R10E8.6 protein.
          Length = 1696

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 576 LLNY*YKLVNYPHITIYRKLRITYNSFNGSLFVSDVYAVGGD 451
           LL+  YKL ++      R+  I+Y  F+    +SD+Y +G D
Sbjct: 263 LLSKKYKLQHFLESPNAREFLISYRKFDEQPMISDIYEMGLD 304


>AC026301-11|AAK68891.2|  273|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.12 protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 364 PCCIASDSCSCRPSFLCNCTCSPCTEQKFF 275
           PC +   +C     F  NCTC   ++ KFF
Sbjct: 29  PCNVDDSTCMPLEDFDQNCTCILLSDDKFF 58


>Z83120-9|CAB05589.2|  773|Caenorhabditis elegans Hypothetical
           protein R06A4.7 protein.
          Length = 773

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 364 PCCIASDSCSCRPSFLCN--CTCSPCTEQKF 278
           PC   +++C+CR + +C+  C C     Q+F
Sbjct: 536 PCNATAENCACRENGVCSYMCKCDINCSQRF 566


>Z81515-11|CAB04199.2|  773|Caenorhabditis elegans Hypothetical
           protein R06A4.7 protein.
          Length = 773

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 364 PCCIASDSCSCRPSFLCN--CTCSPCTEQKF 278
           PC   +++C+CR + +C+  C C     Q+F
Sbjct: 536 PCNATAENCACRENGVCSYMCKCDINCSQRF 566


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -3

Query: 361 CCIASDSCSCRPSFLCNCTCSPC 293
           CC     C CRP   C C C  C
Sbjct: 68  CCRPRCCCCCRPKCCCTC-CRTC 89


>Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical
           protein C06A1.7 protein.
          Length = 149

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -3

Query: 361 CCIASDSCSCRPSFLCNCTCSPC 293
           CC     C CRP   C C C  C
Sbjct: 70  CCRPRCCCCCRPKCCCTC-CRTC 91


>Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical
           protein C06A1.6 protein.
          Length = 152

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -3

Query: 361 CCIASDSCSCRPSFLCNCTCSPC 293
           CC     C CRP   C C C  C
Sbjct: 73  CCRPRCCCCCRPKCCCTC-CRTC 94


>AF011893-1|AAC27124.1|  773|Caenorhabditis elegans maternal-effect
           sterile 2 protein.
          Length = 773

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 364 PCCIASDSCSCRPSFLCN--CTCSPCTEQKF 278
           PC   +++C+CR + +C+  C C     Q+F
Sbjct: 536 PCNATAENCACRENGVCSYMCKCDINCSQRF 566


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,248
Number of Sequences: 27780
Number of extensions: 282035
Number of successful extensions: 888
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)