Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1561
(475 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 274 3e-75
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 274 4e-75
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 274 4e-75
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 160 9e-41
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 151 5e-38
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 91 1e-19
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 57 2e-09
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 52 6e-08
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 48 1e-06
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 42 6e-05
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 42 6e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 6e-04
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 33 0.022
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 31 0.090
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 31 0.090
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.21
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 29 0.27
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 28 0.83
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 27 1.1
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 1.9
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 2.5
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 25 4.5
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 25 4.5
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 5.9
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 5.9
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 25 5.9
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.8
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 274 bits (673), Expect = 3e-75
Identities = 127/142 (89%), Positives = 134/142 (94%)
Frame = +2
Query: 50 REKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAHEMGKGSFKYAWVLDK 229
+EK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDK
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 230 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 409
LKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGE
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGE 122
Query: 410 FEAGISKNGQTREHALLAFPSG 475
FEAGISK+GQTREHALLA+ G
Sbjct: 123 FEAGISKDGQTREHALLAYTLG 144
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 274 bits (672), Expect = 4e-75
Identities = 126/142 (88%), Positives = 134/142 (94%)
Frame = +2
Query: 50 REKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAHEMGKGSFKYAWVLDK 229
+EK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDK
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 230 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 409
LKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGE
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGE 122
Query: 410 FEAGISKNGQTREHALLAFPSG 475
FEAGISK+GQTREHALLA+ G
Sbjct: 123 FEAGISKDGQTREHALLAYTLG 144
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 274 bits (672), Expect = 4e-75
Identities = 126/142 (88%), Positives = 134/142 (94%)
Frame = +2
Query: 50 REKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAHEMGKGSFKYAWVLDK 229
+EK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDK
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 230 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 409
LKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGE
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGE 122
Query: 410 FEAGISKNGQTREHALLAFPSG 475
FEAGISK+GQTREHALLA+ G
Sbjct: 123 FEAGISKDGQTREHALLAYTLG 144
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 160 bits (389), Expect = 9e-41
Identities = 72/140 (51%), Positives = 98/140 (70%)
Frame = +2
Query: 56 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAHEMGKGSFKYAWVLDKLK 235
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 236 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 415
ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 416 AGISKNGQTREHALLAFPSG 475
AG + GQTREHA+LA G
Sbjct: 356 AGFERGGQTREHAVLARTQG 375
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 151 bits (366), Expect = 5e-38
Identities = 71/135 (52%), Positives = 91/135 (67%)
Frame = +2
Query: 56 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAHEMGKGSFKYAWVLDKLK 235
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 236 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 415
ER RG+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 416 AGISKNGQTREHALL 460
G +NGQTREHA L
Sbjct: 295 RGFLENGQTREHAYL 309
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 90.6 bits (215), Expect = 1e-19
Identities = 56/140 (40%), Positives = 77/140 (55%)
Frame = +2
Query: 44 WAREKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAHEMGKGSFKYAWVL 223
+ R+K H+NI IGHVD GK+T T I KC ++G+ SF +
Sbjct: 47 FVRKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQI 91
Query: 224 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 403
DK E+ RGITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A
Sbjct: 92 DKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATD 151
Query: 404 GEFEAGISKNGQTREHALLA 463
G+ QTREH LLA
Sbjct: 152 GQMP-------QTREHLLLA 164
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 56.8 bits (131), Expect = 2e-09
Identities = 37/113 (32%), Positives = 53/113 (46%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAHEMGKGSFKYAWVLDKLKAERE 247
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 248 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
RGITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 51.6 bits (118), Expect = 6e-08
Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAHEMGKGSFKYAWVLDKLKAERE 247
NI + H+DSGK+T T ++Y G I K+ HE+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 248 RGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIKNMITGTSQA 370
+GITI A W+ FE S Y + IID PGH DF +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVL 169
Query: 371 DCAVLIVAAGTGEFEAGISKNGQTREH 451
D AVL++ A +G I+ + Q R +
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 47.6 bits (108), Expect = 1e-06
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAHEMGKGSFKYAWVLDKLKAERE 247
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 248 RGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
RGIT+ ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 41.5 bits (93), Expect = 6e-05
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAHEMGKGSFKYAWVLDKLKA 238
N+ VI HVD GKST T L+ K G I K +F + A E +G + + L A
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAI-SLFA 79
Query: 239 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 391
E D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 80 EMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 41.5 bits (93), Expect = 6e-05
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAHEMGKGSFKYAWVLDKLKA 238
N+ VI HVD GKST T L+ K G I K +F + A E +G + + L A
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAI-SLFA 79
Query: 239 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 391
E D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 80 EMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.1 bits (77), Expect(2) = 6e-04
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +2
Query: 191 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 364
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 365 QADCAVLIVAAGTG 406
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
Score = 22.2 bits (45), Expect(2) = 6e-04
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 71 IVVIGHVDSGKST 109
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 33.1 bits (72), Expect = 0.022
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAHEMGKGSFKYAWVLDKLKA 238
N ++ HVD GK+T L+ G I + T+ + E+ +G + K A
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRG------ITMKSSA 74
Query: 239 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
I K Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 75 ISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.1 bits (67), Expect = 0.090
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 299 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 394
+V+ +D PGH + M+ G + D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 31.1 bits (67), Expect = 0.090
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Frame = +2
Query: 77 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--HEMGKGSFKYAWVLDKLKAERER 250
++GHVD+GK+ +L + +++ E ++G F + K K ++
Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541
Query: 251 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 391
G K + + + IID PGH F GTS + A+L++
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.21
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 224 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 346
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.5 bits (63), Expect = 0.27
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 261 IVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 133
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.9 bits (59), Expect = 0.83
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAHEMGKGSFKYAWVLDKLKAERE 247
+ +V GH+ GKS L+Y + + S +Y D ERE
Sbjct: 142 SFIVAGHLHHGKSALLDLLVYYT-----------HPDTKPPKRRSLRYT---DTHYLERE 187
Query: 248 RGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 391
R ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 188 RVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.5 bits (58), Expect = 1.1
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = +2
Query: 17 SL*SVTNQKWAREKTHINIVVIGHVDSGKSTT-----TGHLIYKCGGIDKRTIEKFEKEA 181
S+ S N+K R N++V+G SGKST + HL+ G +D + + E
Sbjct: 17 SITSQINRKLIRRGFQFNVMVVGPSGSGKSTLINTLFSAHLMDSKGRLDYQAPYRQTTEI 76
Query: 182 H 184
H
Sbjct: 77 H 77
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 1.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 285 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 154
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 2.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 230 VCPIPKHI*RILYPFRGPPSRTSRWYVCQYHHICRSNDQWWWT 102
V +PK I I++ F P S S C+Y S+D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 44 WAREKTHINIVVIGHVDSGKSTTTGHLIYKCG 139
+A E+ I IV +GH GK+T +Y+ G
Sbjct: 36 YAVEQNQITIV-LGHTGCGKTTQIPQFLYEAG 66
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 17 SL*SVTNQKWAREKTHINIVVIGHVDSGKSTTTGHLI 127
SL + +++ R+ + N++V+G SGKST L+
Sbjct: 80 SLPNQWHRRCVRQGFNFNVLVLGESGSGKSTLVNTLL 116
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 169 ELLDGTFVNTTTFVDQMTSGGGLAG 95
ELL +N+T+ DQ + GLAG
Sbjct: 1363 ELLSNKLMNSTSLADQKGAAYGLAG 1387
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 5.9
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -1
Query: 436 PVFRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPES 269
PVF DTS E + S IS + +D S S + +D +I+ S +P+S
Sbjct: 528 PVFSDTSDENDKFHRFRTKSKISKKKYEKMEVDYTSSSETESDASILSPSAAIPKS 583
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.0 bits (52), Expect = 5.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 26 SVTNQKWAREKTHINIVVIGHVDSGKST 109
S+ Q+ R H+ I ++G + GKST
Sbjct: 33 SIVRQRLGRPGNHLKIGIVGMPNIGKST 60
>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 355 CDHVLDEISVSRSINDGNIVLASFEL 278
CDH+L IS SR G + FEL
Sbjct: 23 CDHLLQYISNSRDSKAGLKIFLVFEL 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,116
Number of Sequences: 5004
Number of extensions: 38411
Number of successful extensions: 143
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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