Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1561
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   290   4e-81
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   287   5e-80
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   180   9e-48
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   146   8e-38
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    33   0.002
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.55 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   1.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   6.7  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  290 bits (712), Expect = 4e-81
 Identities = 137/142 (96%), Positives = 138/142 (97%)
 Frame = +2

Query: 50  REKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAHEMGKGSFKYAWVLDK 229
           +EK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVLDK
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62

Query: 230 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 409
           LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE
Sbjct: 63  LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122

Query: 410 FEAGISKNGQTREHALLAFPSG 475
           FEAGISKNGQTREHALLAF  G
Sbjct: 123 FEAGISKNGQTREHALLAFTLG 144


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  287 bits (703), Expect = 5e-80
 Identities = 135/142 (95%), Positives = 137/142 (96%)
 Frame = +2

Query: 50  REKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAHEMGKGSFKYAWVLDK 229
           +EK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVLDK
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62

Query: 230 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 409
           LKAERERGITIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG GE
Sbjct: 63  LKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGE 122

Query: 410 FEAGISKNGQTREHALLAFPSG 475
           FEAGISKNGQTREHALLAF  G
Sbjct: 123 FEAGISKNGQTREHALLAFTLG 144


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  180 bits (437), Expect = 9e-48
 Identities = 85/87 (97%), Positives = 85/87 (97%)
 Frame = +2

Query: 215 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 394
           WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 395 AGTGEFEAGISKNGQTREHALLAFPSG 475
           AGTGEFEAGISKNGQTREHALLAF  G
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLG 87


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  146 bits (355), Expect = 8e-38
 Identities = 69/71 (97%), Positives = 69/71 (97%)
 Frame = +2

Query: 263 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 442
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 443 REHALLAFPSG 475
           REHALLAF  G
Sbjct: 61  REHALLAFTLG 71


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +2

Query: 302 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
           VT +D PGH  FI     G    D  VL+VAA  G
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDG 229



 Score = 25.4 bits (53), Expect = 0.31
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 56  KTHINIVVIGHVDSGKST 109
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 47  AREKTHINIVVIGHVDSGKST 109
           +R+ T INI  IGHV  GKST
Sbjct: 38  SRQAT-INIGTIGHVAHGKST 57


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 287 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 388
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 287 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 388
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 56  FPLPIFG*SRITNCV*Y 6
           F LPIFG   I +C+ Y
Sbjct: 57  FSLPIFGTRWIFSCIGY 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,250
Number of Sequences: 438
Number of extensions: 2617
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)