Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1559
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    27   2.0  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   3.5  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   4.7  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   4.7  

>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 440 KNQLLSLKIQKLKYKLPSLKFQKKKNL 520
           KN LLS KI +  Y+  S+++QK KN+
Sbjct: 40  KNGLLSPKITQRFYQNSSIQYQKDKNI 66


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 385 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 537
           AK S   D   K +  K  + A+ PE SK  V+       KEE  S +++E
Sbjct: 41  AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESE 90


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 324 VFWGYIVLFGLWYSGYLVVTNW 259
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 551 SRQNPSASVALGFSSFEISATVACTSVFESSG*AAGSSTLISA 423
           S  +  +S++ G SS   S T A  S   SSG ++GSS+  S+
Sbjct: 444 SSVSSGSSISSGSSSMSTSYTSASGSSAHSSGSSSGSSSATSS 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,674
Number of Sequences: 5004
Number of extensions: 36766
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)