Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1559
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0559 + 18516732-18516746,18516893-18517330 35 0.056
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 32 0.39
01_01_0886 - 6970112-6970225,6970357-6970473,6970567-6970635,697... 31 0.69
11_01_0612 + 4902197-4902929,4903443-4904071 30 2.1
07_01_0513 + 3828196-3828309,3828408-3828722,3828823-3828879,382... 29 2.8
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 29 3.7
02_01_0201 - 1347868-1347925,1348040-1348135,1348447-1348523,134... 29 3.7
07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733 29 4.8
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 29 4.8
08_02_1167 + 24847689-24848156 28 6.4
08_01_0022 - 163512-163817,165963-166032,166074-166151,166399-16... 28 6.4
06_02_0072 + 11152988-11153102,11153581-11153705,11153860-111540... 28 8.5
>09_04_0559 + 18516732-18516746,18516893-18517330
Length = 150
Score = 35.1 bits (77), Expect = 0.056
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Frame = +1
Query: 271 DEVPAIP-EAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVE-- 441
+E PA P EA ++ AP ++++A K +E AE ++ K E
Sbjct: 35 EETPAAPAEAVAEEAAPAEAEVAETKEAEPAAAEPAAEEVKEAEPEPAEPEAEPAKEEVA 94
Query: 442 -EPAA--QPEDSKTEVQATVAEISKEEKPSATDA 534
EPAA + E + E A VAE KEE+ + A
Sbjct: 95 PEPAAAAEAEAKEAEPAAQVAEEVKEEEAAPAPA 128
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 32.3 bits (70), Expect = 0.39
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +1
Query: 394 SEIPDAEAKSADIKVEEP---AAQPEDSKTEVQATVAEISKEEKPSATDAE 537
+E P AEA S + K EEP AA E +K E +A A ++E KP+ + E
Sbjct: 167 TEEPKAEASSEEAKTEEPKAEAAADEPAKEESKAEAAP-AEEAKPAEPEPE 216
>01_01_0886 -
6970112-6970225,6970357-6970473,6970567-6970635,
6970711-6970849,6970964-6971532,6971799-6971966,
6972097-6972184,6972260-6972818,6972924-6973024,
6973113-6973155,6973845-6973938,6974160-6974215,
6974460-6974581,6975306-6975517
Length = 816
Score = 31.5 bits (68), Expect = 0.69
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = +2
Query: 404 PMLKQNLLILKWKNQLLSLKI--QKLKYKLPSLKFQKKKNLVLLMQKGSADSAAIIPNMV 577
P + L+L K+ +L+I + Y S+K + K++ + +G A AA +
Sbjct: 383 PEYRNGKLLLSAKSLSHALEIFQENKMYDKDSMKLEAKRDASKVADRGIAPFAA--KSET 440
Query: 578 KKIDLAPTVESDAAAIPEIKTPEAADAPKLADNP 679
K L P V AAA P +++ + + DNP
Sbjct: 441 KPATLLPPVPPTAAAAPPVESKAEPEKFEKKDNP 474
>11_01_0612 + 4902197-4902929,4903443-4904071
Length = 453
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +2
Query: 551 SAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLAD 673
+AA PN V ID+ AAA P + PEAA P L D
Sbjct: 25 AAAAAPNQVA-IDVVVVHHHGAAAAPGQQAPEAAPVPHLLD 64
>07_01_0513 +
3828196-3828309,3828408-3828722,3828823-3828879,
3829668-3829826,3829918-3830028,3830173-3830259,
3830359-3830591,3830808-3830886,3831173-3831316,
3831529-3831568,3831667-3831729,3832193-3832224,
3832320-3832361,3832444-3832557
Length = 529
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Frame = +1
Query: 412 EAKSADIKVEEPAAQPEDSKTE--VQATVAEISK--EEKPSAT 528
E++S DIK + +AQP +K E VQAT++ + K EEK T
Sbjct: 394 ESQSEDIKPADSSAQPISAKKEPLVQATLSSMFKKAEEKKRCT 436
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 442 EPAAQPEDSKTEVQATVAEISKEEKPSATDAEG 540
EP A PE + + Q + +K+ PSA D +G
Sbjct: 132 EPPAPPEPKQQQQQQQAGDAAKQAAPSADDEDG 164
>02_01_0201 -
1347868-1347925,1348040-1348135,1348447-1348523,
1349385-1349453,1349576-1349629,1350295-1350350,
1350487-1350694,1350978-1351066,1351163-1351187
Length = 243
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 485 ACTSVFESSG*AAGSSTLISADFASASGISDDF 387
+CT +F+SS +A + ++A FA AS D+F
Sbjct: 64 SCTYIFDSSDASASGAADVAATFAKASRKMDEF 96
>07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733
Length = 181
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +2
Query: 503 QKKKNLVLLMQKGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKT----PEAADAPKLA 670
Q + ++ GSA S I N + ++L + A I + P A D P LA
Sbjct: 71 QSDPRCLCMVLDGSAASFGISINHTRALELPGVCKVQAPPISQCTAVPTPPPAPDTPTLA 130
Query: 671 DNPVD--EDKP 697
D P + ED+P
Sbjct: 131 DEPAETNEDEP 141
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Frame = +1
Query: 280 PAIPEAKK--------DDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIK 435
P IPE+K+ + +P++ DI +S +P++ + + DIK
Sbjct: 1272 PQIPESKELSQQSKILPESSPDNHDIKCEYSSPTPIPESKELSLQSKILPESSSDNQDIK 1331
Query: 436 VEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGFC 546
E+P+ P EV + ++I E D E C
Sbjct: 1332 CEDPSPTPISKSKEV-SPQSKILSESYLDNQDVEREC 1367
>08_02_1167 + 24847689-24848156
Length = 155
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 385 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQA 486
AK E P+AEA++A VEE AA P + E +A
Sbjct: 108 AKEPE-PEAEAEAAAAPVEEAAAAPVEVAEEAEA 140
>08_01_0022 -
163512-163817,165963-166032,166074-166151,166399-166439,
166830-166880,166997-167065,167924-168019,169217-169328,
169629-169774,169965-170015,170171-170281,170378-170447,
172496-172935
Length = 546
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 394 SEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGF 543
S P AD+ +E PE+ K +++ + E+ KEE P DA F
Sbjct: 11 SSSPPRPHPEADMVNKEK--DPEEMKRKLKERILELEKEEVPLPDDASAF 58
>06_02_0072 +
11152988-11153102,11153581-11153705,11153860-11154004,
11154219-11154284,11154418-11154540,11154839-11154961,
11156065-11156193,11156510-11156632,11156737-11156838,
11156943-11157065,11157169-11157270,11157370-11157492,
11157791-11157913,11158209-11158331,11158633-11158761,
11160210-11161039
Length = 867
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = +1
Query: 388 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGFCRLSCHHS 567
KSS++ + K + + E SKT K EK + +G +S +
Sbjct: 460 KSSDVDEGGLKEVSVSYGSNGEE-ETSKTTPMGGYMVDMKNEKSLQAEKDGLKEVSVSYG 518
Query: 568 QHGEED 585
+GEED
Sbjct: 519 SNGEED 524
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,525,442
Number of Sequences: 37544
Number of extensions: 237648
Number of successful extensions: 838
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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