Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1559
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    33   0.27 
AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin p...    28   5.8  
AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin p...    28   5.8  
Z73899-9|CAA98072.2|  905|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z48621-12|CAA88545.2|  425|Caenorhabditis elegans Hypothetical p...    28   7.6  
U28734-1|AAB52603.2|  397|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical ...    28   7.6  

>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +1

Query: 385 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGFCRLSCHH 564
           A+  E  +A A+ A  + EEP A  E++  E +       +EEKP A   E    +    
Sbjct: 21  AEEVEEEEAAAEDAAAEEEEPEAAEEEAPVEEKPKPRPPVQEEKPPAEMTEAEAAMLAAK 80

Query: 565 SQHGEED 585
            +H EE+
Sbjct: 81  KRHEEEE 87


>AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical
           protein F09G2.9 protein.
          Length = 415

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +1

Query: 388 KSSEIPDAEAKSADIKV-----EEPAAQPEDSKTEVQATVAEISKEEKPSATD 531
           KS E P  E K ++  V     +EPAA  E+ K   +  V E  KEE P++++
Sbjct: 126 KSEEAPAPEEKKSEEVVAAEEKKEPAAVVEEKKEVPETPVVEDKKEEAPASSE 178


>Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical
           protein T14B1.1 protein.
          Length = 375

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
 Frame = +1

Query: 400 IPDAEAKSADIKVEEPAAQP---------EDSKTEVQATV-AEISKEEKPSATDAEGF 543
           +PD E    D +VEEP A+          ED ++E++    A++S EE+  A DAE F
Sbjct: 1   MPDPEDPGRDEEVEEPLAKKIRVVAQEAGEDEESEMEKEPNADLSSEEELVAPDAEDF 58


>U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical
           protein PAR2.4b protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +1

Query: 118 VSLAMPVAEEKDVVPAQPIL 177
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical
           protein PAR2.4a protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +1

Query: 118 VSLAMPVAEEKDVVPAQPIL 177
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin
           polymerizing factor-S protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +1

Query: 118 VSLAMPVAEEKDVVPAQPIL 177
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin
           polymerizing factor protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +1

Query: 118 VSLAMPVAEEKDVVPAQPIL 177
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>Z73899-9|CAA98072.2|  905|Caenorhabditis elegans Hypothetical
           protein ZK829.2 protein.
          Length = 905

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 445 PAAQPEDSKT-EVQATVAEISKEEKPSATDAEGFCRLSCHHSQH 573
           P  +   SKT + +  V++ SK+ +PS T  E       HH++H
Sbjct: 265 PKMKTNISKTRKKKGKVSDASKDSRPSETKKETLMMPEIHHTKH 308


>Z48621-12|CAA88545.2|  425|Caenorhabditis elegans Hypothetical
           protein R07B1.8 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = +1

Query: 385 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGFCRLSCHH 564
           +KS  IP    + +    EEP +    +K + Q T A+++ +  P A    G C  +C H
Sbjct: 287 SKSPHIPAMVIEMSSSLDEEPTS----AKIQEQVTPAQLTFDT-PGAI-VNGQCMCACEH 340

Query: 565 SQHGEEDRL 591
           S   E  RL
Sbjct: 341 SAKNEATRL 349


>U28734-1|AAB52603.2|  397|Caenorhabditis elegans Hypothetical
           protein C53C9.2 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 397 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 537
           E  + E +  + K+EEPAA+ E+ + E +    E   EE+    + E
Sbjct: 347 EPEEEEEEEEEEKIEEPAAKEEEEEEEEEEEEEEEELEEEEEEEEEE 393


>AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical
           protein C09E7.7 protein.
          Length = 995

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 404 PMLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQ 505
           P L  N+LI  WK +    K ++ KY +  LK Q
Sbjct: 199 PKLSLNVLISMWKKEFSDWKDEEFKYFIDFLKSQ 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,330,289
Number of Sequences: 27780
Number of extensions: 204502
Number of successful extensions: 773
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)