Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1559
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.0  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   8.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.8  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 395 PRFPMLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQ 505
           P F ML QN+L    + + L  +  + + ++P +KF+
Sbjct: 418 PAFYMLYQNILSYFLRYKKLQPQYSQSELQMPGVKFE 454


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = -3

Query: 554 LSRQNPSASVAL-----GFSSFEISATVACTSVFESSG 456
           ++R N SA V L     G ++  ++ TV CTS   SSG
Sbjct: 129 INRLNYSAFVNLTAYYDGGANLNLNGTVNCTSSIASSG 166


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -2

Query: 456  LSSWFFHFNISRFC 415
            +S+W +H N+++ C
Sbjct: 1674 MSTWGYHHNVNKHC 1687


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 403 ESRMILLPGLFLRFSL 356
           ES  +LLP ++LR++L
Sbjct: 249 ESEDVLLPSVYLRWNL 264


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 697 GLVLIYRIVC*LRSIGCFRSLNFRNCSSI 611
           GL ++ R+     +I     L FRNCS +
Sbjct: 405 GLFVLNRLTLSGNAIASIDPLAFRNCSDL 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,261
Number of Sequences: 438
Number of extensions: 2405
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)