Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1558
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   6.8  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   6.8  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    25   9.0  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   9.0  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   9.0  

>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 370 PHPSNRNALLLHGRNRQGGDNYP 302
           PHP N   +LL G N Q   + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 270 ITQIIILRV*FLLHDVIPSQWKSIVNI 190
           +T  I+L + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 501 WMSGRAHSPPDVKWLLEP 448
           W+ G  +   D +W+LEP
Sbjct: 88  WLGGSTNGEDDSEWILEP 105


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +2

Query: 236 KNQTRKIIICVITGGRT 286
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 310 YHHPAYFCREAVMRFGLKGGAAVVTILETLQLISQ 414
           +  P+ F  E V+   L GG AVV +  TL+ I Q
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQ 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,001
Number of Sequences: 5004
Number of extensions: 41846
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)