Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1558
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0122 + 1495426-1495815                                           31   0.42 
04_03_0988 - 21469811-21469831,21470823-21471047,21471327-214716...    30   0.98 
02_04_0182 + 20719782-20720033,20720502-20720605,20720693-207210...    29   2.3  
01_06_1749 - 39636951-39638102                                         29   3.0  
08_02_0682 + 20018879-20019226,20019324-20019656                       27   6.9  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    27   6.9  

>10_01_0122 + 1495426-1495815
          Length = 129

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -1

Query: 522 FFFFFFAWMSGRAHSPPDVKWLLEPIDIYKVNAPHTL 412
           FFFFFF ++SG   +    +  L+P+ +Y V+  H++
Sbjct: 16  FFFFFFFFLSGCLRAGAGDRGALDPVLLYGVDNAHSM 52


>04_03_0988 -
           21469811-21469831,21470823-21471047,21471327-21471634,
           21471864-21472234,21472327-21472430,21473086-21473325
          Length = 422

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -1

Query: 474 PDVKWLLEPIDIYKVNAPHTLRYKL*GLKYSYNGCPTLQTETH 346
           P +  L EPI + KVNA    +Y+  G KY  +G PTL    H
Sbjct: 86  PVLAGLSEPIIVAKVNAD---KYRKLGSKYGVDGFPTLMLFIH 125


>02_04_0182 +
           20719782-20720033,20720502-20720605,20720693-20721066,
           20721302-20721609,20721853-20722092
          Length = 425

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -1

Query: 474 PDVKWLLEPIDIYKVNAPHTLRYKL*GLKYSYNGCPTLQTETH 346
           P +  L  PI + KVNA    +YK  G KY  +G PTL    H
Sbjct: 90  PVLAGLSTPIVVAKVNAD---KYKKLGSKYGVDGFPTLMLFDH 129


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 392 SSIVTTAAPPFKPKRITA 339
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>08_02_0682 + 20018879-20019226,20019324-20019656
          Length = 226

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 407 ISCKVSSIVTTAAPPFKPKRITA 339
           +SC+V++    AAPP + +R+TA
Sbjct: 28  VSCRVAATAAAAAPPPQGRRLTA 50


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 328  NRQGGDNYPRRLTRGSTTSNYANYNFAGLIFITR 227
            N  GG++Y  R  RG +T+    Y+  GL+ + R
Sbjct: 4896 NEGGGESYRGRSGRGGSTTWVTEYDLYGLLGVER 4929


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,108,048
Number of Sequences: 37544
Number of extensions: 274323
Number of successful extensions: 631
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)