Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1558
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    31   0.38 
Z67734-2|CAA91528.2|  247|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 373 AVVTILETLQLISQGVWRIYFVDVYGLQ*PLNIRW 477
           +V+  + ++QLI   V RI+   VYG++ P+N+ W
Sbjct: 211 SVIMGMASVQLIISSVRRIHDAAVYGIKDPINVSW 245


>Z67734-2|CAA91528.2|  247|Caenorhabditis elegans Hypothetical
           protein B0198.2 protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 382 LQRLPHPSNRNALLLHGRNRQGGDNYPRRLTRGSTTSNYANYN 254
           L +LP+  +R   L    N     + PRR  R S  + Y+NY+
Sbjct: 159 LNKLPNHDDRYYALPRHMNNHKNSSSPRRSPRPSIYNTYSNYS 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,149,074
Number of Sequences: 27780
Number of extensions: 245001
Number of successful extensions: 513
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)