Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1557
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    29   0.45 
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    27   1.8  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   3.1  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    26   5.5  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   7.3  

>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 450 VPNREEASERSPSPRTVVPKMAHRHQPSEKYCGAISEGKLHTDFLPD 590
           +P REE S + P  +  V      + PS+K  G IS  K++  F  D
Sbjct: 105 LPEREEHSSQLPPAQNQVLPFQSLNAPSKKLRGRISLSKIYQFFFDD 151


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -1

Query: 282 DSISKRAVRQEVPYDEHETIRHAHVE*SENQTIVPDFVERFCDVEEESS 136
           +S+   +  + VP  +HE I     + +E+ T +P  ++R C++ +ESS
Sbjct: 275 NSLDNESCVRVVPSFDHEEIGSVSAQGAES-TFLPAVLQRICELGKESS 322


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 16  KGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLI 195
           KG+  D+ F F T  S +   HR+   +L   +  K +  G  + D  K   K W +G  
Sbjct: 289 KGLSHDDVFLFPTGMSAIYNTHRILRLVLD--DSRKSVCFGFCYVDTLKILQK-WGSGCY 345

Query: 196 F 198
           F
Sbjct: 346 F 346


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 275 IESREPAPPHDLSQLESRKALSSHPSYLAYSSTIFPGRRRPI*LYSPTTRLFT 433
           + +  PAPP+  +        SS PS    +S  FP       L+SPT R  T
Sbjct: 233 LSTSTPAPPNS-NNANPSTLFSSIPSSRHTTSNHFPSNSAQSSLFSPTARPLT 284


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 495 TVVPKMAHRHQPSEKYCGAISEGKLHTDFLPD*EEESHTPRLLSLDNPYPG 647
           TV PK++ +  P  K     SE   +T    D E  SH+  ++   N + G
Sbjct: 402 TVTPKISSKASPFNKPNSVHSEASRNTPSSIDRENASHSNPIMMHGNDFGG 452


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 296 PPHDLSQLESRKALSSHPSYLAYSSTIFPGRRRPI*LYSPT 418
           PPH+ SQ +S    +  PS+ +      P   +P  +  PT
Sbjct: 508 PPHNYSQAQSPNLATPSPSFSSLPDVSLPPIVKPNLMSEPT 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,494
Number of Sequences: 5004
Number of extensions: 56744
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)