Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1556
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 186 1e-47
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 179 2e-45
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 170 8e-43
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 145 8e-42
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 54 9e-08
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.30
02_05_0250 + 27153048-27154453,27154546-27154885 31 0.69
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 1.2
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915 29 2.8
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 29 3.7
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695 29 3.7
11_06_0437 - 23533218-23536382 29 4.9
05_01_0297 - 2314687-2316021 29 4.9
08_02_0610 + 19307537-19308011,19308187-19310846 28 6.4
03_05_1012 + 29670310-29670512,29670856-29671001,29671169-296712... 28 6.4
01_01_0334 - 2698347-2699020,2699321-2699477,2699576-2699647,269... 28 6.4
10_01_0357 - 3928646-3928954 28 8.5
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 28 8.5
07_01_0200 + 1433859-1434377 28 8.5
07_01_0196 + 1400708-1401226 28 8.5
07_01_0192 + 1367558-1368076 28 8.5
07_01_0188 + 1334405-1334923 28 8.5
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894... 28 8.5
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 186 bits (454), Expect = 1e-47
Identities = 81/142 (57%), Positives = 112/142 (78%), Gaps = 2/142 (1%)
Frame = +2
Query: 92 SGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYED 271
+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H VGIDIFNGKK ED
Sbjct: 15 AGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLED 74
Query: 272 ICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRTDF-D 445
I PS+HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++DL++P D L Q++ F +
Sbjct: 75 IVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDDTLTNQIKNGFGE 134
Query: 446 SGKELLCTVLKSCGEECVIAVK 511
GK+++ TV+ + GEE + AVK
Sbjct: 135 EGKDMILTVMSAMGEEQICAVK 156
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 179 bits (436), Expect = 2e-45
Identities = 80/145 (55%), Positives = 111/145 (76%), Gaps = 5/145 (3%)
Frame = +2
Query: 92 SGASATFPMQCSALRKNGFVMLKGRPCK----IVEMSTSKTGKHGHAKVHLVGIDIFNGK 259
+GAS T+P Q +RKNG++++K RPCK +VE+STSKTGKHGHAK H V IDIFNGK
Sbjct: 28 AGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGHAKCHFVAIDIFNGK 87
Query: 260 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRT 436
K EDI PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++DL++P D L Q++T
Sbjct: 88 KLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPTDDSLLGQIKT 147
Query: 437 DFDSGKELLCTVLKSCGEECVIAVK 511
F GK+L+ TV+ + GEE + A+K
Sbjct: 148 GFGEGKDLVVTVMSAMGEEQICALK 172
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 170 bits (414), Expect = 8e-43
Identities = 81/154 (52%), Positives = 109/154 (70%), Gaps = 14/154 (9%)
Frame = +2
Query: 92 SGASATFPMQCSALRKNGFVMLKGRPCK-------------IVEMSTSKTGKHGHAKVHL 232
+GAS T+P Q +RKNG +++K RPCK +VE+STSKTGKHGHAK H
Sbjct: 1337 AGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVSTSKTGKHGHAKCHF 1396
Query: 233 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-D 409
V IDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G ++DL++P D
Sbjct: 1397 VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPSD 1456
Query: 410 GDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 511
L TQ++ F GK+L+ TV+ + GEE + A+K
Sbjct: 1457 EALLTQIKDGFAEGKDLIVTVMSAMGEEQICALK 1490
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 145 bits (351), Expect(2) = 8e-42
Identities = 64/114 (56%), Positives = 89/114 (78%), Gaps = 1/114 (0%)
Frame = +2
Query: 173 KIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDG 352
K+VE+STSKTGKHGHAK H V IDIF KK EDI PS+HN DVPHV R +YQL DIS+DG
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDG 133
Query: 353 YLTLMADNGDLREDLKIP-DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 511
+++L+ +NG+ ++DL++P D +L +Q++ F GK+L+ TV+ + GEE + A+K
Sbjct: 134 FVSLLTENGNTKDDLRLPTDDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALK 187
Score = 43.6 bits (98), Expect(2) = 8e-42
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +2
Query: 92 SGASATFPMQCSALRKNGFVMLKGRPCK 175
+GAS T+P Q +RKNG++++K RPCK
Sbjct: 15 AGASKTYPQQAGTIRKNGYIVIKNRPCK 42
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 54.4 bits (125), Expect = 9e-08
Identities = 25/63 (39%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Frame = +2
Query: 305 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKELLCTVLK 478
H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P D L Q++T F GK+++ TV+
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 479 SCG 487
+ G
Sbjct: 106 AMG 108
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 93 PGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKPE 206
P PQPP PC PC K C + C PKP+
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC-KPKPCHCCSCEKPKPK 117
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 31.5 bits (68), Expect = 0.69
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +2
Query: 368 ADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTA 523
A GD DL IPD + TQ+ T+ S C V S G C AV A+ +
Sbjct: 248 ASTGDRSVDLPIPDNETNTQI-TEMRSNGAEKCDVQLSGGTLCSEAVPASNS 298
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 296 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD 415
D P+ RE +++ ++ D Y+T D+G L ED+K+ G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
Length = 1270
Score = 29.5 bits (63), Expect = 2.8
Identities = 25/94 (26%), Positives = 46/94 (48%)
Frame = -3
Query: 493 LLTAGFQHGAQQFLAAVEVSTQLCAEVTIRDFEVLTQVTVVSHQGQVAIIRDISQLVVFA 314
++ AG H ++ FLA ++ T + +E +++ VL+ +T ++ V D L V
Sbjct: 1035 MVEAGTHHTSKPFLAPLKELT-IYSESSVQSMAVLSSLTSLTRLRLV----DCDNLTV-- 1087
Query: 313 LHVGYVHVVCGGTDIFILFTIEDINPNQVNFSVA 212
VG+ V+ G +++ DI+ N SVA
Sbjct: 1088 --VGFDPVMTGSLSELVIYNKPDIDDNNHRCSVA 1119
>12_01_1024 -
10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +2
Query: 374 NGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKAN 517
N D D I G GTQ D +L +VLKS + CV A KA+
Sbjct: 730 NRDTDIDHFIELGKSGTQCSGYLDLVDDLTTSVLKSSSDTCVSAAKAS 777
>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
Length = 664
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 404 PDGDLGTQLRTDFDSGKELLCTVLKSCGE 490
PDGDL ++R +SGKEL L G+
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNALALIGK 234
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 215 HAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDG 352
HA LV + I N +K DI D+ H K+E Y+L + G
Sbjct: 179 HACRKLVDLVIKNKEKTADIENKEKKADIEHKKKEPYKLAIVGTGG 224
>05_01_0297 - 2314687-2316021
Length = 444
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +2
Query: 329 LTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 487
+ D + +G L + AD D+R + DGD G +LR F S +LL V S G
Sbjct: 91 VVDCTGEGVLFVEAD-ADVRLEELEEDGDGGGELRPPFPSMDQLLLDVEGSGG 142
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 75 VCVFDVTHCCVLNLTTVRNDM 13
VC FD+ CC L T+ NDM
Sbjct: 836 VCHFDLRTCCALPPATLENDM 856
>03_05_1012 +
29670310-29670512,29670856-29671001,29671169-29671245,
29671329-29671451,29671558-29671660,29672100-29672173,
29672249-29672329,29672411-29672563,29672780-29672881
Length = 353
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 319 FALHVGYVHVV-CGGTDIFILFTIEDINPNQVNFSVAVLSGFGCGHFNNLAW 167
F L GY+ + GT++F F + NP+ + ++ G C F+ LA+
Sbjct: 63 FYLETGYIGIEEKTGTELFYYFVESETNPDTDPLVLWLVGGPRCSAFSGLAY 114
>01_01_0334 -
2698347-2699020,2699321-2699477,2699576-2699647,
2699697-2700641,2701183-2701259,2701908-2702064
Length = 693
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 612 NIGYKFNLKNELLFQRWCSE 671
NI K + +NE+LF WCS+
Sbjct: 535 NIFMKSSFRNEVLFDEWCSQ 554
>10_01_0357 - 3928646-3928954
Length = 102
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +3
Query: 366 WLTTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAPC*NPAVRSASSP 506
W ++ + V SA T+ A C PC NP RS P
Sbjct: 3 WAAAAAATASAAATAVASA----ATAAATERCVTPCSNPTARSIPRP 45
>08_02_0749 -
20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 155 LKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDI 274
LK + V+ TSK G+ GH KV V ++ KK D+
Sbjct: 679 LKNQDLLDVDSGTSKIGQSGHDKVEHVTNELSISKKAADV 718
>07_01_0200 + 1433859-1434377
Length = 172
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -1
Query: 540 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 454
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>07_01_0196 + 1400708-1401226
Length = 172
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -1
Query: 540 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 454
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>07_01_0192 + 1367558-1368076
Length = 172
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -1
Query: 540 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 454
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>07_01_0188 + 1334405-1334923
Length = 172
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -1
Query: 540 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 454
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>02_05_0402 +
28687597-28687671,28688123-28688235,28688927-28689432,
28689544-28689717,28689953-28690082,28692241-28692772,
28693578-28693823,28694648-28695061
Length = 729
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +2
Query: 269 DICPSTHNMD---VPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD 439
D CP T D V++ + TD +M G + GDLG+ RTD
Sbjct: 233 DQCPGTSATDSTGATCVQQAEKVSTDSDQVAKAAMMTAEGAMNFMRSTISGDLGSFPRTD 292
Query: 440 FDSGKE 457
SGKE
Sbjct: 293 AASGKE 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,980,317
Number of Sequences: 37544
Number of extensions: 464646
Number of successful extensions: 1455
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -