Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1554
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    29   1.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.0  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    27   3.1  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   3.1  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   5.4  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   9.4  
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    25   9.4  

>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 370 VLMLKWLINLNRVIILLTYVINIRIREFSIIFKDALIAI 486
           V  ++WLIN   +I++L + + + I E + +    L AI
Sbjct: 101 VRYIQWLINFPLIIVMLHWTVGVSILEIAYVVCYVLFAI 139


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 207 PRRTACALHPPGNAFSTTLPPAP 139
           P R+A AL P GNA  T+ PP P
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVP 418



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
 Frame = -1

Query: 279 PAPPQ*GRSGQIEINTMSIIACTPPRRTACALHPPGNAFSTTLPPAPF--SRGDDSRPSG 106
           P PP   RS     N    I   P  R+A    PP +A ST   P P   SR   + P+ 
Sbjct: 337 PPPPPPPRS-----NAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391

Query: 105 DTLGRGRDVSVMSGIGCTARIDLLP 31
                GR    +  +G  +R    P
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPP 416


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 303 PVQRSM---ARPAPPQ*GRSGQIEINTMSIIACTPPRRTACALHPPG 172
           PV++S    A  APP+  R+  +   + S+ A T P+  + A+ P G
Sbjct: 200 PVKKSKQKSASTAPPRTRRNSSVSSTSASVAASTAPKAASPAVLPEG 246


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 14  ERSRVSGNRSMRAVHPIPDITETSRPRPSVS 106
           E  RVS N S+    P+PD TE+  P PS +
Sbjct: 561 ESPRVSRNTSLARRKPLPD-TESHSPSPSAT 590


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 373 TRSLQRNTVRGTGCPNRAGLIEGPGATIDGAPCTAT 266
           +R   RN +   G P  AG   GP   ++G P T T
Sbjct: 357 SRLFWRNQLFSVG-PESAGAFPGPACYLNGGPLTVT 391


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 68  DITETSRPRPSVSPLGLESSPREKG 142
           +I+ T+   PS SPL L  +PR +G
Sbjct: 80  NISTTTLAPPSPSPLRLNEAPRRRG 104


>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 556 RYFIVLCNSYCY*I*ISCALILIRYLNLKNHSILFFCEQ 672
           R F +  + YC    +  A+ L  YLN      +FFC +
Sbjct: 152 RLFRIYAHIYCSHFHVMVAMELESYLNTSFKHFVFFCRE 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,660
Number of Sequences: 5004
Number of extensions: 54009
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)