Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1554
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464 33 0.34
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 32 0.45
07_03_1794 - 29580767-29584189 31 1.0
03_05_0424 + 24107009-24107138,24107381-24107784 30 1.8
06_03_0447 + 20878444-20878821 30 2.4
08_02_1169 + 24858843-24858993,24859495-24859788,24860303-248603... 29 3.2
06_02_0179 + 12668623-12669591 29 3.2
11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720... 29 4.2
01_06_0137 + 26855468-26856358 29 4.2
03_05_0153 + 21299150-21299593,21299733-21299873,21299971-213000... 29 5.6
06_01_1085 - 8886868-8887556,8887629-8888574 28 7.4
04_04_0531 - 26048558-26049082 28 7.4
09_04_0264 + 16228344-16228874,16229489-16229609,16230225-162302... 28 9.8
04_03_0174 + 12263843-12265126 28 9.8
03_05_0130 - 21104668-21105030,21106045-21106203,21106265-21107032 28 9.8
>01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464
Length = 504
Score = 32.7 bits (71), Expect = 0.34
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 41 SMRAVHPIPDITETSRPRPSVSPLGLESSPREKGAGGRVVENAFPGG 181
S A+HP+ +T + R +VSP G P + G GGRV + P G
Sbjct: 41 SSPALHPVTTVTNRASARAAVSPGG----PSQLGLGGRVSFSTAPDG 83
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 32.3 bits (70), Expect = 0.45
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 282 APSIVAPG--PSINPARFGHPVPRTVLRCSDRVNAQVV 389
AP+I APG P+ A FGHPVP+ V R + +VV
Sbjct: 238 APAIAAPGMHPAQWNAHFGHPVPKIVSRKHIKKKPKVV 275
>07_03_1794 - 29580767-29584189
Length = 1140
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 41 SMRAVHPIPDITETSRPRPS-VSPLGLESSPREKGAGGRVVENAFPGGCKAQAVRRGG 211
S++ HP I++T P + L +S EKG+ V N+F G + Q +R GG
Sbjct: 538 SLKGEHPPTVISQTHLPHSECLDTLTNKSDSDEKGSSVVVTVNSFGGSKRIQGLRIGG 595
>03_05_0424 + 24107009-24107138,24107381-24107784
Length = 177
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +2
Query: 38 RSMRAVHPIPDITETSRPRPSVSPLGLESSPREKGAG 148
R R P T T RP+ SPLGL RE+G G
Sbjct: 126 RHRRPSRPPETTTATPSSRPASSPLGLLHRERERGEG 162
>06_03_0447 + 20878444-20878821
Length = 125
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 5 RATERSRVSGNRSMRAVHPIP-DITETSRPRPSVSPLGLESSPREKGAGGRVVENAFPGG 181
R ++ G ++ PIP D+ E P PL L + P + G GG V ++
Sbjct: 35 RCLPSRQIDGGKAPPPPRPIPPDLVEGRALAPPPPPLPLTTLPPDSG-GGEGVPASYRRS 93
Query: 182 CKAQA 196
C+A A
Sbjct: 94 CRASA 98
>08_02_1169 +
24858843-24858993,24859495-24859788,24860303-24860349,
24860779-24861277,24862233-24862274,24862376-24862666,
24862793-24862932,24863278-24863770,24864105-24864484
Length = 778
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +2
Query: 68 DITETSRPRPSVSPLGLESSPREKGAGGRVVENAFPGGCKAQAVRRGGVHAMMDIVLISI 247
D+TE P PS +P +++P G A P G +A AV R G+ M+ + S+
Sbjct: 722 DVTEP--PFPSAAP---KNAPGGAANGSTPAPGASPSGSQAAAVMRAGILPMVTALFASL 776
>06_02_0179 + 12668623-12669591
Length = 322
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 207 PRRTACALHPPGNAFSTTLPPAPFSRGDDSRPSGDTLGRG 88
P A A PPG+A T PP P + S+ S T G G
Sbjct: 240 PEAEAAAATPPGDAAQPTGPPPPQQQPTASQSSEVTAGDG 279
>11_05_0004 -
18269416-18269473,18270319-18270509,18271061-18272004,
18272083-18272254,18272332-18272407,18272498-18272617,
18272795-18272959,18273048-18273138,18273673-18273757,
18273873-18274043,18274151-18274207,18274290-18274385,
18275223-18275365,18275464-18275530
Length = 811
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 53 VHPIPDITETSRPRPSVSPLGLESSPREKGAGGRVVENAFPGG 181
V+P+P + T R RP+ + L +SS K A +VV + P G
Sbjct: 386 VNPLP-VPRTKRLRPNATALPADSSAIAKEAATKVVVESEPNG 427
>01_06_0137 + 26855468-26856358
Length = 296
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 41 SMRAVHPIPDITETSRPRPSVSPLGLESSPREKGAGGRVVENAFP 175
S+ A P P R P+VS GL ++P G RV+ +FP
Sbjct: 154 SLVAAPPSPAAAHALRSSPAVSLSGLSTAPIPAGRVLRVLNRSFP 198
>03_05_0153 +
21299150-21299593,21299733-21299873,21299971-21300084,
21300181-21300354,21300486-21300494
Length = 293
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 376 LTRSLQRNTVRGTGCPNRAGLIEGPGATIDGAPCTATIREERPD 245
LTRS +R +R A ++ GPGA +G T EE+P+
Sbjct: 36 LTRSSRRLRLRAAAAAEEADVLPGPGA--EGEMATGGRLEEQPE 77
>06_01_1085 - 8886868-8887556,8887629-8888574
Length = 544
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -2
Query: 377 INTITATQYRPRHGVSKSRGVNRRARC--NDRWRALHRHNKGGA 252
+N A Q R+G S SRG R+ C R R RH +GGA
Sbjct: 331 MNNGRAHQEPSRNGESASRGETCRSSCTRRRRRRRRRRHRQGGA 374
>04_04_0531 - 26048558-26049082
Length = 174
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2
Query: 98 SVSPLGLESSPREKGAGGRVVENAFPGGCKAQAVRRGG 211
S G+ESSP E GA GR + +A G KA R G
Sbjct: 44 SYGAAGVESSPAELGARGRAIPSA-RAGRKAPLDRAAG 80
>09_04_0264 +
16228344-16228874,16229489-16229609,16230225-16230227,
16230663-16230911,16231191-16231344,16231719-16232244
Length = 527
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 83 SRPRPSVSPLGLESSPREKGAGGRVVENAFPGGCKAQAVRRGGVHA--MMDIVLISIW 250
S PR + S + SSPR G GGR + G R + A ++ L+ +W
Sbjct: 17 SSPRAAASSASVASSPRAGGVGGRHHHRRWGGAAAISPSYRAVLLALWLVGFALVFLW 74
>04_03_0174 + 12263843-12265126
Length = 427
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 26 VSGNRSMRAVHPIPDITETSRPRPSVSPLGLESSPREKGA-GGRVVENAFPGGCKAQAVR 202
VSG+ S A P+ S PS++ G ++ R K + GG +++ G A
Sbjct: 136 VSGSAS--AAPPVTLGLPRSASSPSLATSGSGTAVRMKVSYGGEIIQQQRGGSAAASCYY 193
Query: 203 RGGVHAMMDIVL 238
GGVH ++ + L
Sbjct: 194 AGGVHRIVRVGL 205
>03_05_0130 - 21104668-21105030,21106045-21106203,21106265-21107032
Length = 429
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/65 (27%), Positives = 24/65 (36%)
Frame = -1
Query: 195 ACALHPPGNAFSTTLPPAPFSRGDDSRPSGDTLGRGRDVSVMSGIGCTARIDLLPDTRER 16
A A PP T PP RG RP+ +T G ++ + D RE+
Sbjct: 367 AAAYRPP----PPTPPPTAADRGKGKRPAANTPASGSSSKKSRSDSAGLALERIADIREQ 422
Query: 15 SVARH 1
S H
Sbjct: 423 SYQSH 427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,853,705
Number of Sequences: 37544
Number of extensions: 417723
Number of successful extensions: 1364
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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