Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1553
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    27   2.1  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   3.7  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    26   4.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   6.4  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    25   8.5  

>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 572 SDGSVDYFKKKARDLIMSFLN--LELSITI-SI*NNCLNR 462
           +D  +D FK+   DL  SF+N  LE++ TI S+ N C  R
Sbjct: 305 NDQDIDPFKQAITDLPPSFVNIVLEMNATIQSLSNQCQQR 344


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 318 KVQKQILFRNHFTRL*REILKARQLNKSYLIFLDYTQCTSTI 193
           K+Q++  F  H  +L +E   A  LN SY+ + D  QC S I
Sbjct: 480 KLQQE--FYRHVFKLEQEEYAAEGLNWSYIDYQDNQQCISMI 519


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 668 DMLQRTCVNENTFTIET*IIDSYY 739
           + LQRT +++NT + E+ ++D  Y
Sbjct: 494 EKLQRTAISDNTLSAESQLVDDEY 517


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 524 MSFLNLELSITISI*NNCLNRLSIDSDIKLEYNLSHTHISTID 396
           +S L   LS +  + ++C NR   +S + LEY L+ + +  ID
Sbjct: 93  LSILLEILSFSAHLLSHCANRSIYNSTVYLEYLLNSSVLEVID 135


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 440 KLEYNLSHTHISTIDKKADLNSFNIKS*I*KDLIN*F 330
           K+ Y  + T  +  DK    N+F I S I KDL   F
Sbjct: 153 KISYEQTQTLHAVFDKSLSHNNFQINSKILKDLTEHF 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,681
Number of Sequences: 5004
Number of extensions: 57719
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)