Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1553
         (739 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-325|AAF59274.2| 1307|Drosophila melanogaster CG11101-PA...    31   1.6  
AE013599-2467|AAF57864.4|  480|Drosophila melanogaster CG6536-PA...    30   2.9  
AE013599-2466|AAO41361.1|  517|Drosophila melanogaster CG6536-PB...    30   2.9  

>AE013599-325|AAF59274.2| 1307|Drosophila melanogaster CG11101-PA
           protein.
          Length = 1307

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 215 THNVLRPFVSRVNDLLQPELSKSRNIPRTYE 123
           T  + RP  SR+N+   P +S+++N+P  YE
Sbjct: 211 TQGIRRPSASRINNRGPPRISEAQNLPIDYE 241


>AE013599-2467|AAF57864.4|  480|Drosophila melanogaster CG6536-PA,
           isoform A protein.
          Length = 480

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -3

Query: 575 VSDGSVDYFKKKARDLIMSFLNLELSITISI*NNCLNRLSIDSDIKLEYNL 423
           V+ G + YF   A    +S + + L I  S+ +NCL+RL  ++  +  YNL
Sbjct: 271 VTAGFLGYFSVMAAFFWLSVIGIHLRIKFSLASNCLHRLLPENPFR-AYNL 320


>AE013599-2466|AAO41361.1|  517|Drosophila melanogaster CG6536-PB,
           isoform B protein.
          Length = 517

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -3

Query: 575 VSDGSVDYFKKKARDLIMSFLNLELSITISI*NNCLNRLSIDSDIKLEYNL 423
           V+ G + YF   A    +S + + L I  S+ +NCL+RL  ++  +  YNL
Sbjct: 271 VTAGFLGYFSVMAAFFWLSVIGIHLRIKFSLASNCLHRLLPENPFR-AYNL 320


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,055,458
Number of Sequences: 53049
Number of extensions: 531827
Number of successful extensions: 1079
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3334818762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)