Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1553
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M98552-9|AAA28210.3|  569|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL161712-14|CAC35895.1|  286|Caenorhabditis elegans Hypothetical...    28   7.9  

>M98552-9|AAA28210.3|  569|Caenorhabditis elegans Hypothetical
           protein ZK370.8 protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +1

Query: 424 KLYSSFISESIDNRFKQLFYIDIVIDNSKFRKLMIKSRAFFLK*STDPSETKRYVTK 594
           K Y   + +    ++++L  ID++ + + +   MI  R   L  STDP+E  RY+ K
Sbjct: 223 KQYQLALEKFKKGKYEEL--IDLLTEENSYPPAMIL-RGKMLSYSTDPNEATRYIDK 276


>AL161712-14|CAC35895.1|  286|Caenorhabditis elegans Hypothetical
           protein Y66D12A.18 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 280 KTMT*DFKSK-AIE*IIFNIFGLHTMYFDHLSLGSTTYYNPSFPSH 146
           +T+  D K + A + ++   FG  +  FDH S+ +T   NP F +H
Sbjct: 199 RTLPQDLKVEDAPKTVVGGSFGSRSNVFDHNSMTTTFQANPQFATH 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,286,798
Number of Sequences: 27780
Number of extensions: 303811
Number of successful extensions: 747
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)