Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1553
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.0  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -3

Query: 569 DGSVD-YFKKKARDLIMSFLNLELSITISI*NNCLNRLSIDSDIKLEYNLSHTHISTI 399
           D S+D YF++  RD  +SFL    S+++SI    L R  I       YN  H+++ TI
Sbjct: 82  DYSMDCYFRQSWRDSRLSFLGPIKSLSLSI--KMLER--IWRPDTYFYNGKHSYVHTI 135


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 404 YLYVYDLNYIQVLYPSQLIIDLNNYFISISLLITLNLENS 523
           Y +  ++    +      + D+N  F SI+ L+ LNL  +
Sbjct: 520 YAFERNMRLEAIRLDGNFLSDINGVFTSIASLLLLNLSEN 559


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 42  IPLSTRYGRNRYQCL 86
           IP+S   GR+RY+C+
Sbjct: 58  IPVSCISGRDRYECI 72


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 42  IPLSTRYGRNRYQCL 86
           IP+S   GR+RY+C+
Sbjct: 58  IPVSCISGRDRYECI 72


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 42  IPLSTRYGRNRYQCL 86
           IP+S   GR+RY+C+
Sbjct: 58  IPVSCISGRDRYECI 72


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 145 RDLESSGCNRSLTRETNGRSTL 210
           RDL   GC+   +R  N RS +
Sbjct: 7   RDLSKPGCDEQTSRGDNDRSRI 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,308
Number of Sequences: 438
Number of extensions: 4046
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)