Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1552
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259...    31   0.81 
07_03_1536 - 27537394-27537576,27537837-27538073,27538164-275390...    27   9.9  

>02_04_0067 - 19425019-19425288,19425393-19425647,19425766-19425937,
            19426069-19426302,19426523-19426656,19427663-19427746,
            19428355-19428645,19428788-19429120,19429317-19429390,
            19429464-19429644,19429993-19430096,19430232-19430392,
            19430727-19431040,19431583-19431864,19432431-19432732,
            19433176-19433266,19433368-19433421,19438917-19438993,
            19439081-19439240,19439410-19439494,19439574-19440130
          Length = 1404

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 414  FFVLMNIVFRI*FALPRPLIVCWFICCDYTYILFFNLNVFF 292
            F+ L N++    F +P P I  W+I   YT  L + LNVFF
Sbjct: 1300 FYTLQNLMSG--FIVPAPQIPRWWIWLYYTSPLSWTLNVFF 1338


>07_03_1536 -
           27537394-27537576,27537837-27538073,27538164-27539078,
           27540028-27540282,27540872-27540940,27542743-27542805,
           27542833-27542901,27542962-27542997
          Length = 608

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 444 HFNS*IGLCFFFVLMNIVFRI*FALPRPLIVCWFIC 337
           H+ + + L  FFV   ++ RI  ALP+  + C+++C
Sbjct: 532 HYTATVSLLAFFVGY-LMTRIGMALPQACVGCYYVC 566


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,369,229
Number of Sequences: 37544
Number of extensions: 218314
Number of successful extensions: 263
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)