Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1552
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical ...    29   2.2  
U23527-3|AAC46573.3|  596|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL031630-2|CAA21000.1|  310|Caenorhabditis elegans Hypothetical ...    27   8.9  
AF039045-8|AAB94199.1|  300|Caenorhabditis elegans Hypothetical ...    27   8.9  
AF039045-7|AAB94207.1|  333|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical
           protein C47B2.1 protein.
          Length = 488

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 634 FRLFYRDHLFIV-CWFIYCDYTYILF 560
           + LF  DHLFI   WF+ C Y  +LF
Sbjct: 5   YSLFSLDHLFISRYWFVVCSYCSLLF 30


>AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical
           protein Y39C12A.3 protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 313 FQFKCFL*PYWIYRQNEIYSNMLNRI 236
           F   CFL PY  Y+ +E + N L+RI
Sbjct: 255 FTLLCFLAPYLTYKMSEAWQNELHRI 280



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 561 FQFKCFL*PYWIYRQNEIYSNMLKRI 484
           F   CFL PY  Y+ +E + N L RI
Sbjct: 255 FTLLCFLAPYLTYKMSEAWQNELHRI 280


>U23527-3|AAC46573.3|  596|Caenorhabditis elegans Hypothetical
           protein K09E2.2 protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 493 KHIRVNLVLSVNPIWSKKTFK 555
           +HIR NL   V PIW K   K
Sbjct: 275 EHIRFNLYSDVTPIWKKSATK 295


>AL031630-2|CAA21000.1|  310|Caenorhabditis elegans Hypothetical
           protein Y38H6C.2 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 612 TYLLFVGLSTVITHTYFFQFKCF 544
           T  + V LST++T +YFF F+ F
Sbjct: 99  TMAISVALSTLLTFSYFFSFEFF 121


>AF039045-8|AAB94199.1|  300|Caenorhabditis elegans Hypothetical
           protein F15E11.2 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 398 ISYSEFSLLYRDHLLFVGLSAVIT-HTYFFSI*MFSLTLLDLPTKRDL 258
           IS S+F  +Y D +L +GL+ + T     F I   SLT L++P  +++
Sbjct: 128 ISVSQFRWIYNDEMLELGLTNLTTIGCRNFEISSGSLTNLNVPNLKNI 175


>AF039045-7|AAB94207.1|  333|Caenorhabditis elegans Hypothetical
           protein F15E11.11 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 398 ISYSEFSLLYRDHLLFVGLSAVIT-HTYFFSI*MFSLTLLDLPTKRDL 258
           IS S+F  +Y D +L +GL+ + T     F I   SLT L++P  +++
Sbjct: 161 ISVSQFRWIYNDEMLELGLTNLTTIGCRNFEISSGSLTNLNVPNLKNI 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,151,262
Number of Sequences: 27780
Number of extensions: 251664
Number of successful extensions: 520
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)