Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1551
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0053 + 365188-365376,365451-365729,365818-367341 36 0.033
01_06_1560 + 38251268-38251471,38251567-38251672,38251992-382522... 36 0.033
08_01_0348 - 3076395-3078236 31 1.2
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 2.8
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230... 29 5.0
10_07_0019 + 11931519-11932310 28 6.6
07_03_0976 + 23061633-23061686,23062783-23063564,23065468-230657... 28 6.6
03_03_0101 - 14431327-14432390,14432599-14432731 28 6.6
05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524 28 8.7
01_07_0242 + 42234217-42234320,42234708-42235029,42235377-422357... 28 8.7
>08_01_0053 + 365188-365376,365451-365729,365818-367341
Length = 663
Score = 35.9 bits (79), Expect = 0.033
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 581 NSFESFVNRVIWENFYKPIVYIGTDSAEEEEILIEVSFVFKIKEFCTR 724
+S +N IW++ P+VY+ +D +EEIL+EVS VF K + R
Sbjct: 152 DSIRQVIN-CIWKHPNAPVVYLVSDMLGQEEILMEVSKVFGSKIYVDR 198
>01_06_1560 +
38251268-38251471,38251567-38251672,38251992-38252203,
38252306-38252512,38253327-38254694
Length = 698
Score = 35.9 bits (79), Expect = 0.033
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +2
Query: 584 SFESFVNRVI---WENFYKPIVYIGTDSAEEEEILIEVSFVFKIKEFCTRR 727
S ES + +VI W++ + P VY+ D EEILIEVS F K + +R
Sbjct: 167 SKESAIQQVIACIWKHPHAPFVYLACDLLGHEEILIEVSRTFGSKIYVDKR 217
>08_01_0348 - 3076395-3078236
Length = 613
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -2
Query: 363 ITSWSFTMGKLSSTKRVQVSRKN--SLPLQLTI--NFMVSGFTLRISLKRVSFWFLPGPK 196
+ SW+ + LS + V+ ++ ++P++ ++ N MVSGF + WF P+
Sbjct: 111 VVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPE 170
Query: 195 KGSS 184
KG +
Sbjct: 171 KGDA 174
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 71 KYYKNLGCLIKNAKRKKHLVEHEQE-EKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEI 241
K+ N+ + KRK+ LVE+ QE EK D+ + ED F + + T+++++
Sbjct: 2330 KHTSNVLSKVHEQKRKQLLVEYNQEMEKLKQKYDSLLQKEDSFYAQKEAELDTIYRKV 2387
>01_06_1556 -
38222071-38222708,38222795-38222822,38222950-38223070,
38223206-38223318,38223424-38223506,38223868-38223930,
38224100-38224254,38224411-38224580,38225101-38225189,
38225304-38225496,38225655-38225779,38226069-38226475,
38226855-38226919,38227414-38227692,38227772-38227845,
38228241-38228292,38228366-38228473,38228871-38228972,
38229100-38229173,38229262-38229435,38229667-38229771,
38229867-38229977,38230364-38230487
Length = 1150
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = +2
Query: 119 KHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPDTMKLIVNWSGKEF 298
K + +Q + +W +D+ + F G L F++ + D + +V W G ++
Sbjct: 426 KEVYSEDQRKLEWFEVDHAIACRRKFHHEGLCDVLATFQDNQDF--DGYEFLVKWKGLDY 483
Query: 299 LRETW 313
TW
Sbjct: 484 CEATW 488
>10_07_0019 + 11931519-11932310
Length = 263
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 647 RCKRWVCRSSPI*RG 603
RC+RW CRS P RG
Sbjct: 39 RCRRWWCRSEPTSRG 53
>07_03_0976 +
23061633-23061686,23062783-23063564,23065468-23065717,
23065808-23065984
Length = 420
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 611 IWENFYKPIVYIGTDSAEEEEILIEVSFVFKIKE 712
I E P++Y+ TD+AE E L++ VF ++
Sbjct: 300 IVEKANAPVIYLSTDAAESETSLLQSLVVFNDRQ 333
>03_03_0101 - 14431327-14432390,14432599-14432731
Length = 398
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 605 RVIWENFYKPIVYIGTDSAEEEEILIEV 688
R+ W N+ +P + GT S EEE+++I++
Sbjct: 54 RLRWINYLRPDLKRGTFSQEEEDLIIQL 81
>05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524
Length = 427
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 605 RVIWENFYKPIVYIGTDSAEEEEILIEVSFV 697
R+ W N+ +P + G S EEE+++IE+ V
Sbjct: 54 RLRWINYLRPDLKRGAFSQEEEDLIIELHAV 84
>01_07_0242 +
42234217-42234320,42234708-42235029,42235377-42235778,
42235921-42236265,42236785-42236854,42237098-42237173,
42237309-42237459
Length = 489
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 464 HEVIRIV-EPSYVGMNNEYRISLAKKGGGCPIMNIHSE 574
HE ++++ +P G EY +A+ GG PI I ++
Sbjct: 213 HETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,332,671
Number of Sequences: 37544
Number of extensions: 474659
Number of successful extensions: 1356
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -