Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1550
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   4.3  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    24   7.5  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    23   9.8  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    23   9.8  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 249  TRRQRVRTRNAERVNTTDHERGTSHAM*LMFFMQPAL 139
            TR+  V  +  E +NT+D E  T+ A  +  + +P+L
Sbjct: 2216 TRQPEVNIQPEEPINTSDMEGVTTEANEIGSYQEPSL 2252


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 37  LTARHSVNCRTHLNIDISNAHCGPWRH 117
           LT +H   C T L  D S    G W H
Sbjct: 335 LTGKHCSECGTPLYSDPSPEELGIWLH 361


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 216 ERVNTTDHERGTSHAM*LMFFMQPALRQEWYL 121
           ++V+   H RG+  A     F++P  +  WY+
Sbjct: 129 DQVHRPRHYRGSGSAPLFGNFLEPLTKTPWYM 160


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -2

Query: 79  CSNVSCSSHYDAQLTAFFID 20
           C N+ C  ++DA     ++D
Sbjct: 277 CGNIGCGRYHDAHAKQHYVD 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,274,115
Number of Sequences: 5004
Number of extensions: 21488
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)