Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1550
         (341 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            25   0.59 
DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.     21   9.6  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    21   9.6  

>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 124  PGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFIDPR 14
            P    T  NVR+  + + V+ S+  + QLTA   DPR
Sbjct: 1230 PNISLTHSNVRNSYQLTRVAPSNRTNNQLTAQHQDPR 1266


>DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/43 (27%), Positives = 16/43 (37%)
 Frame = +2

Query: 212 RSALRVRTRCLRVVPFN*NLTEDYDYECAFR*LVSPTDLKMFY 340
           R A    TR     P+  +   DY Y   +      TD+K  Y
Sbjct: 135 RPAFDTDTRLRHSYPWGNDSAADYAYHAQYPPYALATDIKPMY 177


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 3    DHLARGSMKNAVNCAS*CELQDTFEHRHFE 92
            D+L R    ++ +C     + +T EH  FE
Sbjct: 928  DYLCRNGFTSSPDCQRCSGVPETAEHAMFE 957


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 336,821
Number of Sequences: 2352
Number of extensions: 6472
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 24075240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)