Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1550
         (341 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ904331-1|ABI98401.1|  835|Homo sapiens lung specific F-box and...    29   2.9  
BC095433-1|AAH95433.1|  505|Homo sapiens tetratricopeptide repea...    28   6.6  
BC026351-1|AAH26351.1|  531|Homo sapiens TTC8 protein protein.         28   6.6  
BC001563-1|AAH01563.1|  353|Homo sapiens Similar to RIKEN cDNA 0...    28   6.6  
AY373972-1|AAR19043.1|  505|Homo sapiens Bardet-Biedl syndrome 8...    28   6.6  
AY366524-1|AAR02193.1|  475|Homo sapiens Bardet-Biedl 8 protein ...    28   6.6  
AY366523-1|AAR02192.1|  505|Homo sapiens Bardet-Biedl 8 protein ...    28   6.6  

>DQ904331-1|ABI98401.1|  835|Homo sapiens lung specific F-box and DH
           domain containing protein protein.
          Length = 835

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
 Frame = +1

Query: 46  RHSVNCRTHLNIDISNAHCGPWRHIQVPLLSEGRLHKKH*SHCVARAA---LVIRRVDAF 216
           RH + C +HL+          +  +  P   +  L ++    C+ +     + +R+ + F
Sbjct: 74  RHYIACVSHLDWLTPREAAATYGTLNEPKTEDEELLERQREKCLRKRIWEKIALRKKELF 133

Query: 217 RVTRSYSLSTCCSF*LKSDRRLRLRMRV 300
           +V   +   TCCS  LK   + RL   V
Sbjct: 134 KVRPPWVSGTCCSSVLKPRCQPRLSQTV 161


>BC095433-1|AAH95433.1|  505|Homo sapiens tetratricopeptide repeat
           domain 8 protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 95  HIAVR-GDTSRYHSCLRAGCIKNINH 169
           H+AV  GDT+  H C R   + N NH
Sbjct: 395 HVAVGIGDTNLAHQCFRLALVNNNNH 420


>BC026351-1|AAH26351.1|  531|Homo sapiens TTC8 protein protein.
          Length = 531

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 95  HIAVR-GDTSRYHSCLRAGCIKNINH 169
           H+AV  GDT+  H C R   + N NH
Sbjct: 421 HVAVGIGDTNLAHQCFRLALVNNNNH 446


>BC001563-1|AAH01563.1|  353|Homo sapiens Similar to RIKEN cDNA
           0610012F22 gene protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 95  HIAVR-GDTSRYHSCLRAGCIKNINH 169
           H+AV  GDT+  H C R   + N NH
Sbjct: 243 HVAVGIGDTNLAHQCFRLALVNNNNH 268


>AY373972-1|AAR19043.1|  505|Homo sapiens Bardet-Biedl syndrome 8
           protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 95  HIAVR-GDTSRYHSCLRAGCIKNINH 169
           H+AV  GDT+  H C R   + N NH
Sbjct: 395 HVAVGIGDTNLAHQCFRLALVNNNNH 420


>AY366524-1|AAR02193.1|  475|Homo sapiens Bardet-Biedl 8 protein
           isoform 2 protein.
          Length = 475

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 95  HIAVR-GDTSRYHSCLRAGCIKNINH 169
           H+AV  GDT+  H C R   + N NH
Sbjct: 365 HVAVGIGDTNLAHQCFRLALVNNNNH 390


>AY366523-1|AAR02192.1|  505|Homo sapiens Bardet-Biedl 8 protein
           isoform 1 protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 95  HIAVR-GDTSRYHSCLRAGCIKNINH 169
           H+AV  GDT+  H C R   + N NH
Sbjct: 395 HVAVGIGDTNLAHQCFRLALVNNNNH 420


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,149,355
Number of Sequences: 237096
Number of extensions: 829753
Number of successful extensions: 1750
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1750
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1910415606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)