Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1550
(341 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81481-2|CAB03948.1| 593|Caenorhabditis elegans Hypothetical pr... 30 0.38
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 29 1.2
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 29 1.2
L23651-10|AAM22041.1| 821|Caenorhabditis elegans Kleisin (abnor... 27 2.7
Z73906-4|CAA98117.1| 508|Caenorhabditis elegans Hypothetical pr... 26 6.1
U41107-2|AAK73880.1| 111|Caenorhabditis elegans Temporarily ass... 26 6.1
Z73425-6|CAB61014.1| 382|Caenorhabditis elegans Hypothetical pr... 26 8.1
U94834-1|AAC47509.1| 378|Caenorhabditis elegans multiple exosto... 26 8.1
AB241458-1|BAF48989.1| 382|Caenorhabditis elegans heparan sulfa... 26 8.1
>Z81481-2|CAB03948.1| 593|Caenorhabditis elegans Hypothetical
protein C38D9.2 protein.
Length = 593
Score = 30.3 bits (65), Expect = 0.38
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 199 RRVDAFRVTRSYSLSTCCSF*LKSDRRLRLRMRVSLARLSYGS 327
RR D +R+ SY+ ST C + DRRL+ + + R +Y S
Sbjct: 52 RRRDRYRLLPSYTPSTWCIEPVDKDRRLKGQQLPFIVRTTYSS 94
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical
protein F18C12.2b protein.
Length = 2271
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 236 RCLRVVPFN*NLTEDYDYECAFR*LVSPTDLK 331
R LRV+PF+ NL ED + +C + P L+
Sbjct: 342 RNLRVIPFSTNLDEDSESQCMKHIIAPPPGLR 373
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical
protein F18C12.2a protein.
Length = 2279
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 236 RCLRVVPFN*NLTEDYDYECAFR*LVSPTDLK 331
R LRV+PF+ NL ED + +C + P L+
Sbjct: 342 RNLRVIPFSTNLDEDSESQCMKHIIAPPPGLR 373
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 236 RCLRVVPFN*NLTEDYDYECAFR*LVSPTDLK 331
R LRV+PF+ NL ED + +C + P L+
Sbjct: 342 RNLRVIPFSTNLDEDSESQCMKHIIAPPPGLR 373
>L23651-10|AAM22041.1| 821|Caenorhabditis elegans Kleisin (abnormal
closure) familyprotein 2 protein.
Length = 821
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 97 HCGPWRHIQVPLLSEGRLHKKH*SHCVARAAL 192
H W P+L EG K++ H V RA +
Sbjct: 711 HVDKWHSRMEPILEEGETRKEYDVHAVGRAVI 742
>Z73906-4|CAA98117.1| 508|Caenorhabditis elegans Hypothetical
protein D2030.3 protein.
Length = 508
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 63 QDTFEHRHFERTLRSVETHPGTTPV*GPAA*KTLI 167
++T EH H R L +V + P TT + A KTL+
Sbjct: 369 RNTSEHSHRLRALCNVASRPRTTDLANVKAKKTLV 403
>U41107-2|AAK73880.1| 111|Caenorhabditis elegans Temporarily
assigned gene nameprotein 234 protein.
Length = 111
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -2
Query: 172 NVINVFYAAGPQTGVVPGCVSTDRNVRSKCRCSNVSCSSHYDAQLT 35
N I Y G GC ST++N C C+ C+S +D T
Sbjct: 58 NNIYATYGCGTNQCSSSGC-STNKNGYGTCCCTRDLCNSGFDFSKT 102
>Z73425-6|CAB61014.1| 382|Caenorhabditis elegans Hypothetical
protein F12F6.3 protein.
Length = 382
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 122 RYHSCLRAGCIKNINHIAWLVPRS*SVVLTRSALRVRTRCLRVVP 256
R+ LR+GC+ + +W++P S ++ +A+ V R +P
Sbjct: 284 RFLETLRSGCVPVVISDSWILPFSETIDWNSAAIVVAERDALSIP 328
>U94834-1|AAC47509.1| 378|Caenorhabditis elegans multiple exostoses
homolog 1 protein.
Length = 378
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 122 RYHSCLRAGCIKNINHIAWLVPRS*SVVLTRSALRVRTRCLRVVP 256
R+ LR+GC+ + +W++P S ++ +A+ V R +P
Sbjct: 280 RFLETLRSGCVPVVISDSWILPFSETIDWNSAAIVVAERDALSIP 324
>AB241458-1|BAF48989.1| 382|Caenorhabditis elegans heparan sulfate
polymerase protein.
Length = 382
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 122 RYHSCLRAGCIKNINHIAWLVPRS*SVVLTRSALRVRTRCLRVVP 256
R+ LR+GC+ + +W++P S ++ +A+ V R +P
Sbjct: 284 RFLETLRSGCVPVVISDSWILPFSETIDWNSAAIVVAERDALSIP 328
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,332,474
Number of Sequences: 27780
Number of extensions: 134104
Number of successful extensions: 255
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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