Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1549
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    29   0.57 
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    28   1.3  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    27   1.7  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    27   2.3  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    26   4.0  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   7.0  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -1

Query: 501  ERRFRPYCPMKEPSSFMPAVSPSPYSAIESVSLSGPGLVPLLIEWRDL 358
            E R R Y P+   S +     P+P   I ++SL   GL+ +L+EW DL
Sbjct: 1891 EHRGR-YVPILIDSLYKFGAIPNPNPEIRALSL---GLIKVLLEWNDL 1934


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/62 (24%), Positives = 24/62 (38%)
 Frame = +2

Query: 353 DNKSRHSMSSGTKPGPESDTDSMAEYGDGETAGMNEDGSFIGQYGRKRRSATFGQSDSAS 532
           DN S  S S         D+DS +   D E+   ++D             ++   SDS S
Sbjct: 233 DNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSES 292

Query: 533 QA 538
           ++
Sbjct: 293 ES 294



 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = +2

Query: 362 SRHSMSSGTKPGPESDTDSMAEYGDGETAGMNEDGSFIGQYGRKRRSATFGQSDSASQA 538
           S  S SS        D DS +   D E+   +ED             ++   SDS+S +
Sbjct: 218 SSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNS 276



 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = +2

Query: 362 SRHSMSSGTKPGPESDTDSMAEYGDGETAGMNEDGSFIGQYGRKRRSATFGQSDSASQA 538
           S  S SS        D DS +   D E+   +ED             ++   SDS+S +
Sbjct: 164 SSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSS 222


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/56 (25%), Positives = 21/56 (37%)
 Frame = +2

Query: 353 DNKSRHSMSSGTKPGPESDTDSMAEYGDGETAGMNEDGSFIGQYGRKRRSATFGQS 520
           +N S  +  S    G    +++   YG   T G N   +  G YG    +   G S
Sbjct: 51  NNNSNSTYGSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYGNYGATNSNGDAGYS 106


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 531 EAESDWPNVAERRFRPYCPMKEPSSFMPAVSPSPYSAIESVSLSG 397
           + E  W N+  RR R    + E S  +  V P+P ++  +  + G
Sbjct: 343 DEEDSWENITARRQRRKKGIDETSKIIEEVQPTPLTSESATKVIG 387


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 477 PMKEPSSFMPAVSPSPYSAIESVSLSGPGLVP 382
           PM  P+S +   SP P  ++ +  +S P L P
Sbjct: 458 PMSAPTSVLTGTSPQPSPSLSTSIMSTPKLNP 489


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 493  FPAVLSDEGAVLVHAGRLSVTVLRHRVRVALGPRLGT 383
            F A+LSDE    +H  R SV++L+  +      RLG+
Sbjct: 892  FDAILSDEPLYPIHMPRDSVSILQQLLTRDPKKRLGS 928


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,070
Number of Sequences: 5004
Number of extensions: 37503
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)