Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1549
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0202 - 26339467-26339494,26339579-26339624,26339742-263397... 30 1.4
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 30 1.8
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 29 2.4
06_03_0455 + 20978658-20978677,20979104-20979608 29 2.4
01_02_0091 - 11023912-11024017,11024112-11024185,11024478-110248... 29 2.4
07_03_0103 - 13425411-13425713,13425874-13425974,13426410-134264... 29 3.1
06_01_0231 + 1775861-1776157 29 3.1
05_04_0219 + 19150612-19150878 29 3.1
01_06_0404 + 29098141-29098214,29098459-29098673,29099491-290995... 29 3.1
07_01_1013 - 8593690-8595006,8595275-8595928,8595951-8596065,859... 29 4.1
01_01_0880 + 6903535-6903932,6904931-6905022,6905601-6905680,690... 28 7.2
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 27 9.6
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653... 27 9.6
04_04_0158 - 23187070-23187264,23187347-23187477,23187550-231877... 27 9.6
>05_06_0202 -
26339467-26339494,26339579-26339624,26339742-26339785,
26340729-26340851,26341010-26341124,26341447-26342207,
26342305-26342711,26342798-26342900,26344642-26345144
Length = 709
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +3
Query: 381 VVPSRGPRATRTLWRST--VTERRPA*TRTAPSSDSTAGNDVRQHSASRTQPRKHFATLV 554
VV RG + + WRST ++ ++ ++ S A QH AS +QP + F +
Sbjct: 312 VVRGRGSKRYQPHWRSTAEISSEHNNKSQNLENTSSNANLGKHQHQASNSQPERGFP--M 369
Query: 555 *KSFSPD-PSLA*PVYSLKP 611
+SF+ + S + P Y +P
Sbjct: 370 KQSFASNLNSASPPFYPSRP 389
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 401 ESDTDSMAEYGDGETAGMNEDGSFIGQYGRKRRSATFG 514
+ D+++ YGD G DGS +G YG +G
Sbjct: 275 DGDSNNGGGYGDSHNGGGYGDGSTVGGYGTDNTGGVYG 312
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 29.5 bits (63), Expect = 2.4
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Frame = +2
Query: 254 RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRH-SMSSGTKPGPESD-TDS--- 418
R R + HD GR D D YT D + RH + S P+ D +DS
Sbjct: 330 RRRRQEMPKHDEYSRRGRSDADDRRGRHYTPSDDRRGRHYTPSDHNSAYPKHDSSDSRHR 389
Query: 419 MAEYGDG-ETAGMNEDGSFIGQYGRKRRSATFGQ 517
EYG G T+ + +G + + R TF +
Sbjct: 390 RPEYGRGNSTSELGSEGQRRQESQQGRNGPTFNR 423
>06_03_0455 + 20978658-20978677,20979104-20979608
Length = 174
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 30 RDPDGAGARPAVRGQGHGARRPLLQHQRAADGR 128
R GA ARPAV G+ RR ++ + AADGR
Sbjct: 61 RPEAGAKARPAVGGRRGRRRRRVVGAEAAADGR 93
>01_02_0091 - 11023912-11024017,11024112-11024185,11024478-11024834,
11024938-11025166,11025468-11025559,11026099-11026326,
11027108-11027356,11027429-11027471,11027589-11027836,
11027922-11028035,11028122-11028322,11028417-11028593,
11028725-11028853,11029210-11029287,11029369-11029464,
11029563-11029634,11031549-11031677,11032105-11032220,
11033048-11033204,11033343-11033426,11033513-11033574,
11034901-11035067,11035162-11035226,11035315-11035371,
11035547-11035633,11036638-11036703,11036810-11036908
Length = 1193
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 37 LTGLEPGQLYEVKVTVHDGHYFSTSE 114
L GL PG +Y V+V D H F+ E
Sbjct: 980 LRGLVPGSIYSVRVVAKDDHRFAAVE 1005
>07_03_0103 -
13425411-13425713,13425874-13425974,13426410-13426471,
13426951-13427123
Length = 212
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +3
Query: 21 GRLRDPDGAGARPAVRGQG---HGARRPLLQHQRA 116
G R AGA P R +G HG RRP L+ +A
Sbjct: 22 GAARRQSAAGAGPCYRAEGGHCHGGRRPTLRQAKA 56
>06_01_0231 + 1775861-1776157
Length = 98
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +3
Query: 33 DPDGAGARPAVRGQGHGARRPLLQHQRAADGR 128
D A A A G G GA RP Q AA+GR
Sbjct: 40 DNAAASAAAAAEGTGRGATRPAEQATAAAEGR 71
>05_04_0219 + 19150612-19150878
Length = 88
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 419 MAEYGDGETAGMNEDGSFIGQYGRKRR 499
++E GDG G+ DG +G+ GR+RR
Sbjct: 58 LSEGGDGLGLGVGGDGGKLGEEGRRRR 84
>01_06_0404 +
29098141-29098214,29098459-29098673,29099491-29099596,
29099686-29100235,29100332-29100429,29100519-29100764,
29100867-29100981,29101092-29101305,29101402-29101991
Length = 735
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 3 TNDITEGRLRDPDGAGARPAVRGQGH 80
T D G++RD GA A P G GH
Sbjct: 542 TGDNDSGKIRDETGAAATPFAYGSGH 567
>07_01_1013 -
8593690-8595006,8595275-8595928,8595951-8596065,
8596560-8596861,8596884-8597369
Length = 957
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 380 SGTKPGPESDTDSMAEYGDGETAGMNEDGSFIGQYGRKRRSATFG 514
+G G +D ++ YGDG + DGS +G Y R +G
Sbjct: 25 NGDNGGGFADGSHVSGYGDGNAVRVFGDGSHLGGYVPDSRLGAYG 69
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/58 (27%), Positives = 21/58 (36%)
Frame = +2
Query: 383 GTKPGPESDTDSMAEYGDGETAGMNEDGSFIGQYGRKRRSATFGQSDSASQAFCNARL 556
G G D YG+G+ G DGS + YG FG ++RL
Sbjct: 8 GDNGGGYGDGHDGGGYGNGDNGGGFADGSHVSGYGDGNAVRVFGDGSHLGGYVPDSRL 65
>01_01_0880 +
6903535-6903932,6904931-6905022,6905601-6905680,
6905885-6905926,6906001-6906128,6906530-6906710,
6906801-6906979,6907469-6907717,6907950-6908193
Length = 530
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 486 PYCPMKEPSSFMPAVSPSPYSAIESVSLSGPGL-VPLLI 373
P+ F+P+ SPSP SA S S P L VPL++
Sbjct: 18 PFHAFASTLPFLPSPSPSPTSASPSPSPPAPHLAVPLIL 56
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 21 GRLRDPDGAGARPAVRGQGHGARR 92
G+ R GAGARPA RG+ RR
Sbjct: 659 GQRRGRRGAGARPAARGRCRRGRR 682
>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
24665465-24665887,24665960-24666252,24666332-24666605,
24666856-24667358,24667464-24667785,24667875-24668220,
24668339-24668997,24669524-24669625,24669656-24670052,
24670155-24670270,24670360-24670386
Length = 1704
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -1
Query: 528 AESDWPNVAERRFRPYCPMKEPSSFMPAVSPS----PYSAIESVSLSGPGLVPLLIEWRD 361
+ES W N+ E P + SS P +PS +S +E+ +L+ LV L I + D
Sbjct: 1304 SESFWTNILESVIYPLFSSERSSSNDPTSTPSIPEDDFSNLETQTLAVKCLVGLFINFFD 1363
Query: 360 LL 355
++
Sbjct: 1364 VM 1365
>04_04_0158 -
23187070-23187264,23187347-23187477,23187550-23187763,
23187834-23187932,23188034-23188156,23188247-23188366,
23188447-23188506,23188592-23188884,23189554-23189707,
23189813-23190130,23190668-23190798,23191001-23191586,
23192125-23192739
Length = 1012
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 281 HDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYGDGET 445
HDRE+ + D ++ E+T D + ++ + + G E D+D+ AE+G T
Sbjct: 234 HDREM---KNDMDESS--EHTSSDDEDADLAIIASEQSGSEEDSDNPAEHGSNHT 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,686,138
Number of Sequences: 37544
Number of extensions: 286236
Number of successful extensions: 1152
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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