Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1549
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon gu... 56 2e-08
U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon gu... 56 2e-08
U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon gu... 50 1e-06
U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon gu... 50 1e-06
AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFO... 50 1e-06
AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFOR... 50 1e-06
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 2.8
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 2.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 2.8
U97194-2|AAN84846.1| 806|Caenorhabditis elegans Prion-like-(q/n... 29 3.7
Z82265-5|CAB05175.1| 334|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z82265-4|CAB05174.1| 293|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 8.6
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 8.6
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 8.6
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 8.6
>U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform a protein.
Length = 1144
Score = 56.0 bits (129), Expect = 2e-08
Identities = 35/77 (45%), Positives = 44/77 (57%)
Frame = +2
Query: 254 RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 433
R RG Y V RE GR P G +Y D+ + S++ G+K ES+TDSMA+YG
Sbjct: 1054 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1106
Query: 434 DGETAGMNEDGSFIGQY 484
D + EDGSFIGQY
Sbjct: 1107 DTDPGVFTEDGSFIGQY 1123
>U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform b protein.
Length = 1328
Score = 56.0 bits (129), Expect = 2e-08
Identities = 35/77 (45%), Positives = 44/77 (57%)
Frame = +2
Query: 254 RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 433
R RG Y V RE GR P G +Y D+ + S++ G+K ES+TDSMA+YG
Sbjct: 1238 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1290
Query: 434 DGETAGMNEDGSFIGQY 484
D + EDGSFIGQY
Sbjct: 1291 DTDPGVFTEDGSFIGQY 1307
>U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform d protein.
Length = 1147
Score = 50.0 bits (114), Expect = 1e-06
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Frame = +2
Query: 254 RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 433
R RG Y V RE GR P G +Y D+ + S++ G+K ES+TDSMA+YG
Sbjct: 1054 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1106
Query: 434 DGETAGMNEDGSFI---GQY 484
D + EDGSFI GQY
Sbjct: 1107 DTDPGVFTEDGSFIAVSGQY 1126
>U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform c protein.
Length = 1331
Score = 50.0 bits (114), Expect = 1e-06
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Frame = +2
Query: 254 RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 433
R RG Y V RE GR P G +Y D+ + S++ G+K ES+TDSMA+YG
Sbjct: 1238 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1290
Query: 434 DGETAGMNEDGSFI---GQY 484
D + EDGSFI GQY
Sbjct: 1291 DTDPGVFTEDGSFIAVSGQY 1310
>AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFORM
protein.
Length = 1147
Score = 50.0 bits (114), Expect = 1e-06
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Frame = +2
Query: 254 RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 433
R RG Y V RE GR P G +Y D+ + S++ G+K ES+TDSMA+YG
Sbjct: 1054 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1106
Query: 434 DGETAGMNEDGSFI---GQY 484
D + EDGSFI GQY
Sbjct: 1107 DTDPGVFTEDGSFIAVSGQY 1126
>AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFORM
protein.
Length = 1331
Score = 50.0 bits (114), Expect = 1e-06
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Frame = +2
Query: 254 RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 433
R RG Y V RE GR P G +Y D+ + S++ G+K ES+TDSMA+YG
Sbjct: 1238 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1290
Query: 434 DGETAGMNEDGSFI---GQY 484
D + EDGSFI GQY
Sbjct: 1291 DTDPGVFTEDGSFIAVSGQY 1310
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein
K07E12.1b protein.
Length = 12268
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = +2
Query: 302 GRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEY--GDGETAGMNEDGSFI 475
G YP G E P DN + G TDS + GDG NE+G I
Sbjct: 10873 GNYIYPAVGSDEKILPTDNLGKVVYPITRPDGSPLATDSTGVFVTGDGTIVERNEEGKPI 10932
Query: 476 GQYGR 490
G G+
Sbjct: 10933 GPDGQ 10937
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = +2
Query: 302 GRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEY--GDGETAGMNEDGSFI 475
G YP G E P DN + G TDS + GDG NE+G I
Sbjct: 10918 GNYIYPAVGSDEKILPTDNLGKVVYPITRPDGSPLATDSTGVFVTGDGTIVERNEEGKPI 10977
Query: 476 GQYGR 490
G G+
Sbjct: 10978 GPDGQ 10982
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = +2
Query: 302 GRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEY--GDGETAGMNEDGSFI 475
G YP G E P DN + G TDS + GDG NE+G I
Sbjct: 10918 GNYIYPAVGSDEKILPTDNLGKVVYPITRPDGSPLATDSTGVFVTGDGTIVERNEEGKPI 10977
Query: 476 GQYGR 490
G G+
Sbjct: 10978 GPDGQ 10982
>U97194-2|AAN84846.1| 806|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform b protein.
Length = 806
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 353 DNKSRHSMSSGTKPGPESDTDSMAEYGDGETAG-MNEDGSFIGQYGRKRRSAT 508
+NK + + SSG + G + + S + G G G + +DG Q G++++ T
Sbjct: 347 NNKKKTASSSGNEEGKDGRSSSASSNGRGARGGSVLKDGKGDKQKGKRKKEET 399
>Z82265-5|CAB05175.1| 334|Caenorhabditis elegans Hypothetical
protein F02H6.7 protein.
Length = 334
Score = 27.9 bits (59), Expect = 6.5
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -2
Query: 389 WYHCSSNGETCCPMGAC 339
WYHC SN + P C
Sbjct: 141 WYHCGSNSQNAAPTQPC 157
>Z82265-4|CAB05174.1| 293|Caenorhabditis elegans Hypothetical
protein F02H6.6 protein.
Length = 293
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 5/20 (25%)
Frame = -2
Query: 389 WYHCSSNGET-----CCPMG 345
WYHC+S +T CCP G
Sbjct: 102 WYHCASTSQTTPTAPCCPTG 121
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 395 GPESDTDSMAEYGDGETAGMNEDGSFIGQYGRKRRSATFGQSD 523
GP++ + G T+G GSF GQ G R A G ++
Sbjct: 54 GPKASNAPPPQTSFGSTSGTRVGGSFGGQAGVDGRGAPLGSAE 96
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 395 GPESDTDSMAEYGDGETAGMNEDGSFIGQYGRKRRSATFGQSD 523
GP++ + G T+G GSF GQ G R A G ++
Sbjct: 54 GPKASNAPPPQTSFGSTSGTRVGGSFGGQAGVDGRGAPLGSAE 96
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 37 LTGLEPGQLYEVKVTVHDGHYFSTSEL--RTVDTFIVRTDSEAG 162
L L+PG LYEV VT +S + +TV TF + D G
Sbjct: 3102 LENLQPGSLYEVSVTPRRPPSLHSSIVTPKTVRTFRTKNDVPTG 3145
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 37 LTGLEPGQLYEVKVTVHDGHYFSTSEL--RTVDTFIVRTDSEAG 162
L L+PG LYEV VT +S + +TV TF + D G
Sbjct: 3102 LENLQPGSLYEVSVTPRRPPSLHSSIVTPKTVRTFRTKNDVPTG 3145
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 37 LTGLEPGQLYEVKVTVHDGHYFSTSEL--RTVDTFIVRTDSEAG 162
L L+PG LYEV VT +S + +TV TF + D G
Sbjct: 3102 LENLQPGSLYEVSVTPRRPPSLHSSIVTPKTVRTFRTKNDVPTG 3145
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 37 LTGLEPGQLYEVKVTVHDGHYFSTSEL--RTVDTFIVRTDSEAG 162
L L+PG LYEV VT +S + +TV TF + D G
Sbjct: 3102 LENLQPGSLYEVSVTPRRPPSLHSSIVTPKTVRTFRTKNDVPTG 3145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,754,921
Number of Sequences: 27780
Number of extensions: 218639
Number of successful extensions: 751
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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