Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1548
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...   124   1e-29
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    39   6e-04
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa...    31   0.21 
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    29   0.49 
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    29   0.65 
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    28   1.5  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   6.1  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   6.1  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   8.0  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    25   8.0  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   8.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.0  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    25   8.0  

>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score =  124 bits (299), Expect = 1e-29
 Identities = 68/172 (39%), Positives = 103/172 (59%), Gaps = 1/172 (0%)
 Frame = +3

Query: 117 QILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMAAGLQLKNH 296
           + L +T+SPD N    A + L++AA T+F  ++ +L+  L    +    RMAAGL LKN 
Sbjct: 5   EFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLALKNA 64

Query: 297 LTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIG-TENSRPSSAAQCVAYVAVAELPV 473
           +T+++   K +YQQ W +L  +++  +K   L  +G +E+    SAAQ VA +A  EL  
Sbjct: 65  ITAREEARKLEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQLVAAIAAYELAT 124

Query: 474 GQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILT 629
            QW DL+  LV NV   Q + LK+  +L+ IGYIC+ +  EVL+ +SN ILT
Sbjct: 125 NQWPDLMVTLVANVGEGQPSALKQH-SLQTIGYICESVSPEVLSAQSNAILT 175



 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 625 LPAIIHGMRSTEPSNHVRLAATQALLNS 708
           L A++ G R  EP   VRLAA  AL +S
Sbjct: 174 LTAVVAGARKEEPDAAVRLAALGALYDS 201


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 2/143 (1%)
 Frame = +3

Query: 87  MHAETTLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVAR 266
           M A+ TL L Q+L ++++PD  ++  A R L+        + + +   ++    N QV +
Sbjct: 1   MDAQFTLELTQLLFQSIAPDTTQITEATRALETKYLKEPGSLLSLFH-IMGTCENPQVRQ 59

Query: 267 MAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAI--GTENSRPSSAAQC 440
           +AA ++ +         L  +Y   W ++  DV+  I+ N+L       E+    +  + 
Sbjct: 60  LAA-IEARK--------LCHKY---WSSVDADVQNQIRSNLLDITLKEPESIVRHAFGRV 107

Query: 441 VAYVAVAELPVGQWNDLIPILVE 509
           +A +A  +LP G+WN+L   LV+
Sbjct: 108 IAALAKLDLPEGKWNELSAFLVQ 130


>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 13/72 (18%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +3

Query: 279 LQLKNHLTSKDP--TLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYV 452
           LQ+K    ++ P  TL+ ++   W  +  D   ++++ +          P    +C+ Y+
Sbjct: 25  LQIKEQYDAEQPLITLQTKFNLAWALVRSDSTQHVQQGLSLFCSIYKDSPERRLECLYYI 84

Query: 453 AVAELPVGQWND 488
           A++   + Q+ +
Sbjct: 85  ALSHYKLKQYEE 96


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = +3

Query: 168 VRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWL 347
           ++Y++  A    T  +  +   LL GG+  +A++   +  K HL S D TL+       +
Sbjct: 191 LKYVESLAVALRTESVTWVRYFLLMGGHIVLAKILQAIHEKKHLKSPDITLE-------I 243

Query: 348 ALAEDVRLYIKENILAAIGTENSRP-SSAAQCV 443
           A+ + +R  I + I       N  P  S   C+
Sbjct: 244 AILKSMRCIIGQKIGTDFYLSNKYPIDSVVHCL 276


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +3

Query: 93  AETTLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMA 272
           A  T + I +L  ++    + LEA   Y+     TNF    K  + +++    S V+ M 
Sbjct: 266 ASATASGIAVLADSIKKQEHGLEAVSLYIAQQYITNFGKLAKASNSMIVPASTSDVSGMV 325

Query: 273 A 275
           A
Sbjct: 326 A 326


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/48 (27%), Positives = 31/48 (64%)
 Frame = +1

Query: 34  KNRIESVFCNINLRIVKQCTQKQH*RLYKYLRRQFHLIEMNWKQQLDT 177
           ++++E+   N N +++K+ +++Q  R YK + ++   IE+N   Q+D+
Sbjct: 742 RSKLEAYHINCN-KVIKEFSKRQTAR-YKIIEKELAQIEVNLVSQIDS 787


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 69  LKNSETMHAETTLTLIQILEKTVSPDRNELEAAVRYLDH 185
           +KN +  H +T L  + IL++    D  +    +RYL H
Sbjct: 549 IKNRQKFHGQT-LVEVGILKRLCEADPADKNNVIRYLSH 586


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 172 LTAASNSFRSGETVFSSICISVNVVSACI 86
           LTA + S  +G ++ S+I ++ N++SA I
Sbjct: 117 LTAYATSAFAGHSLLSTIAVANNIISAAI 145


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 260 HLTVTTLEKDIGQHFDECCEICGGSMVEV 174
           +L  TT++K     FD   ++CGG+ + +
Sbjct: 627 YLLNTTVKKQFSAFFDGFMKVCGGNAISL 655


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 596 FSINILTNVANSLQSRFLFEFSRLDMNNIFYKNW 495
           F I +L  V   L+ + L + SRL ++ + ++NW
Sbjct: 421 FFIQLLMAVFKLLKPKLLVDDSRLVLSALLFENW 454


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -2

Query: 377 YIKSNIFCQSQPSLLILLFKCRIFRSEMIFQLQTSCHPSHLTVTTLEKDIGQ 222
           YI  N F  +     +LLF   +F    +F +Q   H +H T   L+K  G+
Sbjct: 11  YIDINFFRNATLDQCLLLFYLSLFSLTNLFLIQKLFHANH-TQHPLKKYFGE 61


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 538 SSVDWT*TTFSTRIGIRSFHCPTGSSATATYAT 440
           SS   T +T ST     SFH PT SS T++ +T
Sbjct: 798 SSSSRTISTSSTNEYNTSFHAPTVSSTTSSSST 830


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 514 LFMSNLLNSKRKRLWR 561
           +F+ N+L  KR++LWR
Sbjct: 239 VFVENVLTKKRRKLWR 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,941
Number of Sequences: 5004
Number of extensions: 54144
Number of successful extensions: 165
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)