Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1546
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   2.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.9  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 501 VTNNKKKQRTASSAPKSSWLMPKDR 575
           +T N  K+ TAS A K  W+  ++R
Sbjct: 151 LTVNPSKRITASEALKHPWICQRER 175


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 483 ESGQTQVPEYSSK*RPAVHLTSVASP 406
           ES  +  P++  +  P+ HL  ++SP
Sbjct: 36  ESSASNSPDHYERFSPSTHLMDLSSP 61


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 264 LLIFLIVGSNTRPSGQSLVVATPSTHSKNL 175
           LL FL++ S TRPS  +   A PS+   N+
Sbjct: 7   LLFFLLLSSCTRPSRGN---AVPSSQRGNV 33


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 264 LLIFLIVGSNTRPSGQSLVVATPSTHSKNL 175
           LL FL++ S TRPS  +   A PS+   N+
Sbjct: 7   LLFFLLLSSCTRPSRGN---AVPSSQRGNV 33


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 91  YDEHSHDDLFF*KYSFFFL 35
           +DE  HD ++  KY + F+
Sbjct: 525 FDEIKHDMVYLQKYFYLFM 543


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 91  YDEHSHDDLFF*KYSFFFL 35
           +DE  HD ++  KY + F+
Sbjct: 525 FDEIKHDMVYLQKYFYLFM 543


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,761
Number of Sequences: 438
Number of extensions: 4158
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)